PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676727556
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family WRKY
Protein Properties Length: 389aa    MW: 42993.5 Da    PI: 6.5082
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676727556genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.11.3e-26210269259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-.SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkvers.aedpkvveitYegeHnhe 59 
                +Dg++WrKYGqK+ k ++ pr+YYrC+++ +Cpv+k+v+r+ +ed+++  +tYeg+H+h+
  676727556 210 NDGCQWRKYGQKTAKANPLPRAYYRCSMSsNCPVRKQVQRCgEEDTSAYMTTYEGTHDHP 269
                8***************************99**********8457999************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-27194271IPR003657WRKY domain
PROSITE profilePS5081124.73204271IPR003657WRKY domain
SuperFamilySSF1182904.84E-24205271IPR003657WRKY domain
SMARTSM007742.4E-32209270IPR003657WRKY domain
PfamPF031063.7E-25210269IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MIKEETDSCV HPSDGGVMAE SDKEVELDAT KAKVEKVREE NEKLKLLLST ILTDYNSLQM  60
HVSNVIRQQH EASEELDING NDDFSVDISL RLGRSDSNIS KNVDEIDKTS LEKISDENKE  120
GSDKKRSALG LGFHIQSCED PDTDHQNMKL NNLSKGLKNK NADTKCLSSR KDAKTSRNED  180
HQEVLEGHEQ LGLKKTRVCV KAPCEDPSIN DGCQWRKYGQ KTAKANPLPR AYYRCSMSSN  240
CPVRKQVQRC GEEDTSAYMT TYEGTHDHPI PIEATHMAAG TSAAASLLQS GSSSSASLNY  300
FFPFHHFSLS TTNSHPTVTL DLTRPNYDPT QSPNYPLSSS SLSFSSSSDR PSPSNSRTLS  360
FSGLRSQAPL SKYSQLAPLS HQTKLSGQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-182092711474WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676727556
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9124040.0EU912404.1 Brassica napus WRKY transcription factor 36 (WRKY36.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105649.10.0PREDICTED: probable WRKY transcription factor 36
RefseqXP_013728850.10.0probable WRKY transcription factor 36
SwissprotQ9CAR41e-165WRK36_ARATH; Probable WRKY transcription factor 36
TrEMBLA0A397YXU60.0A0A397YXU6_BRACM; Uncharacterized protein
STRINGBo6g110430.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139131825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69810.11e-152WRKY DNA-binding protein 36
Publications ? help Back to Top
  1. Yang Y, et al.
    UVR8 interacts with WRKY36 to regulate HY5 transcription and hypocotyl elongation in Arabidopsis.
    Nat Plants, 2018. 4(2): p. 98-107
    [PMID:29379156]