PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676725930
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family WRKY
Protein Properties Length: 534aa    MW: 59053.1 Da    PI: 6.9344
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676725930genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.19.9e-30238297159
                ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r++ed ++++ tYeg+Hnh+
  676725930 238 MNDGCQWRKYGQKIAKGNPCPRAYYRCTIApSCPVRKQVQRCSEDMSILISTYEGTHNHP 297
                58***************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-31223299IPR003657WRKY domain
SuperFamilySSF1182908.24E-27231299IPR003657WRKY domain
PROSITE profilePS5081128.334233299IPR003657WRKY domain
SMARTSM007743.3E-35238298IPR003657WRKY domain
PfamPF031064.0E-26239297IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MEKDDFLKSS HGREERGEEV GKLDSSQDDP HQDIIRSKLD SINVEMEEAK EENRRLKSSL  60
SRIKKEFEIL QTQYNQLMVQ HEDPNKFSSK SHHHDKGKDE DKERISEGDE LVLLSLGRQL  120
KSPVLSGSIT NKVDKRKDFM DETSDDEKIA ENKKSSDQRL SMGFAYKDLS NPTEKLEIDH  180
NQENTSLEAS NTTKILSENS FGFKNDGDDH EDQEELLPQN LVKKTRVSVR SRCETPTMND  240
GCQWRKYGQK IAKGNPCPRA YYRCTIAPSC PVRKQVQRCS EDMSILISTY EGTHNHPLPL  300
SATAMASATS AAASMLLSGA SSSSASASAA DLHGLKFSLS GNSNIPKHKS PFLQTSSSPS  360
SSGHPTVTLD LTTSSSSQQP FLSMLNRFSA PPNVSRSHDY SSTNLNFSNN TNTLMNWGGG  420
GGSNRNEKYR AAYGNISTHQ QSPYHNMIQT RIAGSSFDPF GRSSSSSPHR TQTNLDHVGI  480
KNTTHQVQSI PAETIKAITT DPNFQSALAT ALSSIIGTDL KMDNVTRNEA EKSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-20225299174WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676725930
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006416557.20.0probable WRKY transcription factor 61
SwissprotQ8VWV60.0WRK61_ARATH; Probable WRKY transcription factor 61
TrEMBLA0A397YZA70.0A0A397YZA7_BRACM; Uncharacterized protein
STRINGXP_006416557.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM126631729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18860.10.0WRKY DNA-binding protein 61
Publications ? help Back to Top
  1. Gao R,Liu P,Yong Y,Wong SM
    Genome-wide transcriptomic analysis reveals correlation between higher WRKY61 expression and reduced symptom severity in Turnip crinkle virus infected Arabidopsis thaliana.
    Sci Rep, 2016. 6: p. 24604
    [PMID:27086702]