PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676725436
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 281aa    MW: 30775.8 Da    PI: 7.4967
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676725436genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.7e-1976126256
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                 y+GVr+++ +g+WvAeIr p +   r r++lg+++tae Aa a+++a+ kl+ge
  676725436  76 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDTAEAAAYAYDRAAYKLRGE 126
                59******9.**********954...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.57E-1775135No hitNo description
SuperFamilySSF541711.31E-2276133IPR016177DNA-binding domain
PROSITE profilePS5103223.30176133IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-3176134IPR001471AP2/ERF domain
SMARTSM003801.1E-3676139IPR001471AP2/ERF domain
PfamPF008472.6E-1377126IPR001471AP2/ERF domain
PRINTSPR003673.3E-107788IPR001471AP2/ERF domain
PRINTSPR003673.3E-1099115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MEESNDVYQM NFSPKISEIR ASLSQIILAG GPNTLDSIFS LLTPSSSTTT SIDTLHPPPL  60
PPPQLAAGRT AKKKKLYRGV RQRHWGKWVA EIRLPQNRMR VWLGTYDTAE AAAYAYDRAA  120
YKLRGEYARL NFPNLKDPSE LLGLGDSSKL IALKNAVDGK IQSICQRVRR ERAKKNSKGS  180
KTSSAATADS SYTSSPEILS SPAVTATATA VNSEDSYWTS PMGLWNSENS SPASVSISDE  240
MPATTATMME EDTMMGVDTD GFLLARMPSF DPELIWEVLA N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-2073133263ATERF1
3gcc_A8e-2073133263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676725436
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391624.11e-144ethylene-responsive transcription factor ERF061
SwissprotQ9C7W21e-125ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A1J3K3F91e-143A0A1J3K3F9_NOCCA; Uncharacterized protein
STRINGXP_006391624.11e-143(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41742551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.15e-77ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]