PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676724798
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family TCP
Protein Properties Length: 216aa    MW: 23733.3 Da    PI: 9.7912
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676724798genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP97.13.4e-3055129474
        TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec....e 74 
                ++++++++h kv+gR+RRvR++ +caar+F+L++eLG+ +d++t++WLl  a+p+i+ +tg + ++  ++     
  676724798  55 QTKSTKDRHLKVEGRGRRVRIPPLCAARIFQLTRELGHRSDGETLQWLLHHAEPSIISATGRGIKPTDSVsqppP 129
                6789**********************************************************5555522222221 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.0E-2458127IPR005333Transcription factor, TCP
PROSITE profilePS5136924.11359113IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MDPKNPPNQP NFLNPSPEKQ DNNNDRTSKE TEPKVEGKRK WKQKEKETKY GLEIQTKSTK  60
DRHLKVEGRG RRVRIPPLCA ARIFQLTREL GHRSDGETLQ WLLHHAEPSI ISATGRGIKP  120
TDSVSQPPPP RAVDLNVNGA SRSQLSNGFW PNEAGFGGGG GGANPSTTGG FDLNNGIGFL  180
GFDFNGSQMY QQMGQEQAKV LHLHGAQEEN ADKNGS
Cis-element ? help Back to Top
SourceLink
PlantRegMap676724798
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405404.11e-89transcription factor TCP6
SwissprotQ9FLM61e-61TCP6_ARATH; Transcription factor TCP6
TrEMBLV4LWE93e-88V4LWE9_EUTSA; Uncharacterized protein
STRINGXP_006405404.15e-89(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157431416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41030.15e-54TCP family protein
Publications ? help Back to Top
  1. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]