PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676723276
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NF-X1
Protein Properties Length: 1932aa    MW: 213101 Da    PI: 6.4496
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676723276genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X117.87.4e-0611091127119
   zf-NF-X1    1 CGkHkCqklCHeGpCppCp 19  
                 CG+H C+k+CH GpC+pC+
  676723276 1109 CGRHHCEKTCHVGPCDPCQ 1127
                 ******************6 PP

2zf-NF-X116.91.4e-0511731190118
   zf-NF-X1    1 CGkHkCqklCHeGpCppC 18  
                 CG+H C+  CH+GpC+ C
  676723276 1173 CGNHFCSDVCHPGPCGDC 1190
                 ****************99 PP

3zf-NF-X121.74.3e-0712321249118
   zf-NF-X1    1 CGkHkCqklCHeGpCppC 18  
                 CG H+C++ CH G CppC
  676723276 1232 CGLHTCNEVCHSGVCPPC 1249
                 ****************** PP

4zf-NF-X117.87.4e-0613301348119
   zf-NF-X1    1 CGkHkCqklCHeGpCppCp 19  
                 CG+H+C++lCH G CppC 
  676723276 1330 CGQHSCESLCHSGHCPPCL 1348
                 ******************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF747887.85E-35131351IPR016159Cullin repeat-like-containing domain
SuperFamilySSF578501.77E-69301000No hitNo description
PROSITE profilePS500168.929938999IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.583941997IPR001841Zinc finger, RING-type
PROSITE patternPS013590941996IPR019786Zinc finger, PHD-type, conserved site
CDDcd060088.09E-810301092No hitNo description
SMARTSM004380.02310541072IPR000967Zinc finger, NF-X1-type
PfamPF014221510561071IPR000967Zinc finger, NF-X1-type
CDDcd060082.01E-1510991147No hitNo description
PfamPF014222.4E-411091126IPR000967Zinc finger, NF-X1-type
SMARTSM004382.6E-411091128IPR000967Zinc finger, NF-X1-type
CDDcd060081.58E-1111631208No hitNo description
PfamPF014221.5E-411731190IPR000967Zinc finger, NF-X1-type
SMARTSM004386.1E-511731192IPR000967Zinc finger, NF-X1-type
CDDcd060085.63E-1612221269No hitNo description
PfamPF014223.5E-512321249IPR000967Zinc finger, NF-X1-type
SMARTSM004381.8E-512321251IPR000967Zinc finger, NF-X1-type
CDDcd060085.28E-612811341No hitNo description
PfamPF014223312911302IPR000967Zinc finger, NF-X1-type
SMARTSM004389212911322IPR000967Zinc finger, NF-X1-type
CDDcd060086.59E-1313201372No hitNo description
PfamPF014221.8E-413301347IPR000967Zinc finger, NF-X1-type
SMARTSM004382.0E-413301349IPR000967Zinc finger, NF-X1-type
CDDcd060081.16E-813771424No hitNo description
PfamPF014223313871404IPR000967Zinc finger, NF-X1-type
SMARTSM004380.07913871405IPR000967Zinc finger, NF-X1-type
CDDcd060081.18E-414301485No hitNo description
PfamPF014220.01314401455IPR000967Zinc finger, NF-X1-type
SMARTSM004380.004614401470IPR000967Zinc finger, NF-X1-type
CDDcd060082.92E-614681517No hitNo description
SMARTSM004385.414791500IPR000967Zinc finger, NF-X1-type
PfamPF014242.7E-416111675IPR001374R3H domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1932 aa     Download sequence    Send to blast
MESSEEDDDF PCIESITPQS KIDSVHQSLT EKGIRKLCCE LLDLKDAVEN MCGDMRTKYL  60
AFLRISEEAV EMEHELVELR KHISSQGILV QDLMAGLARE MDEWKRSAGD ADDSDNSEVS  120
DTFPNESADP QSEFLEKIDL LLAEHKVDEV LGAMDAEERN NPELKGSVEI SSYKSAFMER  180
KAVLEDQLLR IAKQPSISVA ELKHALNGLI KLGKGPSAHQ LLLKFYATSL HRRIEAFLPS  240
CSSCPNTFPA TLSKLVFSNI SVAAKESAAM FGDDDNPAYS NKVVQWAERE VEYLVRLVKE  300
NAAPSETVSA LRAASVCLQD CLNYCKVLEP QGLLLSKLFL VLFRPYVEEV LELNFRRARK  360
VIFDLTETDE GLESSSEFVA LLSEFAIASD TTMTDCSIRF MQIVQDILEQ LTHLVVLHFG  420
ESVLTRILQL YDKYIDFLIK ALPGHADEDG LPELQDHTIL ARAETDSEQL ALLGAAFTIL  480
DELLPKSLIK VWNLQIENGG GDGDSSASLI SSSAPELKEW KRHMVQAFDK LRNYFCLQFV  540
LSFIYSREGL TRLDALIYLT ETPDDSHLPS LPFQALFSKL QQLAIIAGDV LLGKEKLQKI  600
LLARLTETVI IWLSNEQEFW SAFEDESTPL QPFGLQQLIL DMNFTVEIAR FAGYPFKVVQ  660
NHASVVINRA ISIFSARGIN PQSSLPKAEW FTEAAKSAIN RLLMGSDEAS EPEEYDCEED  720
EGHIVLPEID DDEHSDSEET SSLSTMDSFE SFASASMADL EKALCEPIAP TVTTGTGSGS  780
VFVESDKKMS SQVRRDRPRY NHHNSQQTWV PRGSSTSVPP VNEPSLPPPP TNTDTSSEGL  840
DSRASSRPVY LQRHQNGSAR PAYNHHQRSN VAAPPPPNRQ RRNNYAPGTL TDNRQRVASR  900
TRPVYQGKRV AKEDNVVSTD PNLPQLVQEL QEKLVKSSVE CMICYDKVGR SANVWSCSSC  960
YSIFHMHCIK KWARAPTSID LLAEKNQGDN WRCPGCQSVQ LTSSREICYR CFCGKRKDPP  1020
SDPYLTPHSC GEPCGKPLEK EFAASAETSK EDLCPHVCVL QCHPGPCPPC KAFAPPRSCP  1080
CGKKMIHTRC SERRSLLVCG QRCEKLLNCG RHHCEKTCHV GPCDPCQVLV NATCFCKKKV  1140
ETVICGDMNV KGELKAEDGV YSCNLNCGKP LGCGNHFCSD VCHPGPCGDC DLMPSRVKTC  1200
YCGKTRLEEQ TRQSCLDPIP SCSSICKKLL PCGLHTCNEV CHSGVCPPCF VQVNQKCRCG  1260
STSRTVECYI TTSSESEKFV CSKPCGRKKN CGRHRCSERC CPLLNAKKND LSGGWDPHVC  1320
QLPCGKKLRC GQHSCESLCH SGHCPPCLEM IFTDLTCACG RTSIPPPLPC GTPVPSCQLP  1380
CSIPQPCGHS ATHGCHFGDC PPCSAPVEKK CVGGHVVLRN IPCGLKDIRC NKICGKTRRC  1440
GMHACARTCH PEPCDSYDES KAGVRVTCGQ TCGAPRRDCR HTCAECCHPS QPCPDSRCEF  1500
PVTITCSCGR ITAKVPCDAG GNACNLRVDS VYEASVLQKL PTTLQPVESS GNRIPLGQRK  1560
LSCDDECAKL ERKRVLQDAF DITPPNLDSL HFSENSAMTE IISDIYRRDP KWVLAVEERF  1620
KFLVLGKARG STSALKVHVF CPMQKDKRDT VRLLAERWKL AVSNAGWEPK RFTVVHVTQK  1680
SKPPTRIIGA RAGAVSVSGP HAPSFDPLVD MDPRLVVSLL DLPREANISA LVLRFGGECE  1740
LVWLNDKNAL AVFHDHARAA TAMRRLDHGS VYHGAVVVQN GAQSSSLGNA WGKLPASSSW  1800
DVQKANPWKK PVIQECDDTW GAEDSPIAGS STDIIQPSAW NSATSNTPVV TSVNRWSVLE  1860
PEKTKTSAVE PLVQTEEGSS SKAAGKQPVE GSGEEVVDDW EKRLYACTTP VMSLGLCPLQ  1920
SLGDSQRRAV LF
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676723276
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895190.0AC189519.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB091G04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013640936.10.0NF-X1-type zinc finger protein NFXL1-like
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLM4DTW50.0M4DTW5_BRARP; Uncharacterized protein
STRINGBra019958.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59552647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1