PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676721566
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family WRKY
Protein Properties Length: 522aa    MW: 57309.9 Da    PI: 8.1488
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676721566genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1048.1e-33188245260
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                +DgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers  +++++ei+Y+g+Hnh+k
  676721566 188 EDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSL-EGQITEIVYKGSHNHPK 245
                7****************************************.***************85 PP

2WRKY105.33.2e-33362420159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+vkg+++prsYY+Ct+ gCpv+k+ver+++d ++v++tYeg+Hnh+
  676721566 362 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTVGCPVRKHVERASHDMRAVITTYEGKHNHD 420
                59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-27178246IPR003657WRKY domain
SuperFamilySSF1182904.18E-24187246IPR003657WRKY domain
SMARTSM007741.0E-33187245IPR003657WRKY domain
PROSITE profilePS5081122.905188246IPR003657WRKY domain
PfamPF031067.9E-25188244IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.2E-37347422IPR003657WRKY domain
SuperFamilySSF1182903.14E-29354422IPR003657WRKY domain
PROSITE profilePS5081138.48357422IPR003657WRKY domain
SMARTSM007748.2E-39362421IPR003657WRKY domain
PfamPF031061.9E-25363420IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010120Biological Processcamalexin biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0010508Biological Processpositive regulation of autophagy
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0070370Biological Processcellular heat acclimation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MAASSLLTMD NSRTRQNMNG SVNWQQQQTG RSSASSLEDL EIPKFRSFAP SSISISPSLV  60
SPSTCFSPSV FLDSPAFVAS SAHILASPTT GALLKTESNQ KSINEEAKTN NNSNNNVNFF  120
DFSFQTQSSG VPAPTVTTTT TTANSSIFQS QEQQRKNQSD QWSQTETRPN NNNHQAVSYN  180
GREQRKGEDG YNWRKYGQKQ VKGSENPRSY YKCTFPSCPT KKKVERSLEG QITEIVYKGS  240
HNHPKPQSTR RSSSSSTFHS AVFNAGLDHH GSSDQPNSNN SFHHSDSFGI QQDDNTTSGS  300
VGDDDFERGS SVISREEEDC GSEPEAKRWK GESETNGGVG NGSKTVREPR IVVQTTSDID  360
ILDDGYRWRK YGQKVVKGNP NPRSYYKCTT VGCPVRKHVE RASHDMRAVI TTYEGKHNHD  420
VPAARGSGYA TNRAAQDPSS APIRPAAIAG HSNYTTSSQA PYTLQILHNN NNNNTNAGSF  480
GYAMNNNSSS LQTQQNNFVG GGFSRAKEEP NEESSFFDSF LS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-38188423878Probable WRKY transcription factor 4
2lex_A9e-38188423878Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00299DAPTransfer from AT2G38470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3526830.0AK352683.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-03-H12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006293466.10.0hypothetical protein CARUB_v10023006mg
SwissprotQ8S8P50.0WRK33_ARATH; Probable WRKY transcription factor 33
TrEMBLR0HAD40.0R0HAD4_9BRAS; Uncharacterized protein
STRINGAT2G38470.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45832755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.10.0WRKY DNA-binding protein 33