PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676717412
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 416aa    MW: 45069.9 Da    PI: 5.3749
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676717412genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.88.2e-11202241447
        AP2   4 kGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaai 47 
                 GVr ++ +g+W+AeIr p     + ++ +lg++ t eeA ka+ 
  676717412 202 VGVRLRR-SGKWAAEIRNPI----TkTKMWLGTYETREEAGKAYA 241
                6***999.7*********72....36*****************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.842200258IPR001471AP2/ERF domain
PfamPF008471.6E-6202240IPR001471AP2/ERF domain
SMARTSM003807.8E-8202254IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-11202246IPR016177DNA-binding domain
CDDcd000182.74E-15202240No hitNo description
Gene3DG3DSA:3.30.730.104.7E-15203245IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MSAVSESALI LSLFRSSSTS SALFSSLTTV LTALRFCSKQ RLTLEVPSLS MGLRPQRTCS  60
GVEVFGDMKK KSCTKPVRCR KVRIIVSDPY ATDDSSDDEW FKSKPPTVKR IVHEINLPFQ  120
QSECSQSRCD GVKRSRHKAS MQLNKPVGKA SLQLNKPVGK ASLQLNKPVG KASLQLNKPV  180
GKASLQLNKP VGKASLQLNT PVGVRLRRSG KWAAEIRNPI TKTKMWLGTY ETREEAGKAY  240
ADKKVEFDAL ASSGTAVSSS VASVNSQCLP SPAPAPAPAS ASASGPCVNG DDDLSKEKMS  300
LSKDVAASGD STEEGFFDFS ELEIPDLSFL AAEEESTVSG ANGAELDFDW SLTDKDFGHM  360
FDDYSFLDDV NIFSEIENSV PRELPDYDFT DTEVEPGDLN FVFADQLAPP LNIACP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676717412
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013586951.12e-90PREDICTED: ethylene-responsive transcription factor ERF116
RefseqXP_013586952.12e-90PREDICTED: ethylene-responsive transcription factor ERF116
RefseqXP_013697768.12e-90ethylene-responsive transcription factor ERF116
RefseqXP_013697769.12e-90ethylene-responsive transcription factor ERF116
RefseqXP_013697770.12e-90ethylene-responsive transcription factor ERF116
SwissprotQ8GW178e-67EF116_ARATH; Ethylene-responsive transcription factor ERF116
TrEMBLA0A3N6RPG11e-116A0A3N6RPG1_BRACR; Uncharacterized protein
STRINGBra024743.1-P1e-106(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151191619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25470.23e-64ERF family protein