PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676714772
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 232aa    MW: 26018.5 Da    PI: 6.5402
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676714772genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.4e-1274120453
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 
                ++  rE++RRdr+N++f eL ++l +    +++K +K++i   A++ +++
  676714772  74 SKACREKQRRDRLNDKFTELSTILEPG---RAPKTDKVAIISDAIRMVNQ 120
                5678**********************9...9**************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.38570121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.41E-873126No hitNo description
PfamPF000101.9E-974120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-1274143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-1275143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-876127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MVSPENTNWL SDYPLIDGGA FSDHNPTFPW QIDQIDGSAS VSVEVDGFLC DSDVIKEPGS  60
RKRIKSESCG GSSSKACREK QRRDRLNDKF TELSTILEPG RAPKTDKVAI ISDAIRMVNQ  120
VRDEAQKLKD LNSSLQEKIK ELKDEKSELR DEKQKLKIEK ERIEQQLKAI KTQPLPQPCF  180
LPNQPTLSQA QAQAPGNKLV PFTTYPGFAM WQFMPPAAVD TSQDHVLRPP VA
Cis-element ? help Back to Top
SourceLink
PlantRegMap676714772
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3534060.0AK353406.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-30-I24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006393084.11e-153transcription factor bHLH115
SwissprotQ9C6821e-148BH115_ARATH; Transcription factor bHLH115
TrEMBLE4MY091e-152E4MY09_EUTHA; mRNA, clone: RTFL01-30-I24
TrEMBLV4JXZ41e-152V4JXZ4_EUTSA; Uncharacterized protein
STRINGXP_006393084.11e-153(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14372890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51070.11e-151bHLH family protein
Publications ? help Back to Top
  1. Liang G,Zhang H,Li X,Ai Q,Yu D
    bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(7): p. 1743-1755
    [PMID:28369511]