PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676709390
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family TCP
Protein Properties Length: 397aa    MW: 41909.8 Da    PI: 6.5111
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676709390genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP133.52e-41532103123
        TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............. 88 
                + k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++  ++s +ss+s+ s++             
  676709390  53 VTKRSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIPANFSsLSVSLRSSGSTLSAPtsksvplygalgl 152
                679*****************************************************************99987888888888655557777889999999 PP

        TCP  89 ..........................kaaksaakskksqksaasalnlakesrakararar 123
                                          ++ +++   +++q+++a+a  ++  +  ++ +r+r
  676709390 153 shhphhhqyeeggafgahtppllgfhHHLQQQ---QQQQHHQAAAETMQGGTDGESFSRKR 210
                98888889999999999888887653222222...22222222223333333333333322 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.9E-4257221IPR005333Transcription factor, TCP
PROSITE profilePS5136928.41158112IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MDLSDAAAAA ARGSSRQLVD PSLSIVPRST PLEDTTTLTT TSSPSAATTS GVVTKRSTKD  60
RHTKVDGRGR RIRMPALCAA RVFQLTRELG HKSDGETIEW LLQQAEPAIV AATGTGTIPA  120
NFSSLSVSLR SSGSTLSAPT SKSVPLYGAL GLSHHPHHHQ YEEGGAFGAH TPPLLGFHHH  180
LQQQQQQQHH QAAAETMQGG TDGESFSRKR FRSVDLSKEN EDGKQNEKES ESSVAGTAAP  240
MWAVAPTNRS PGGNTFWMLP VPTTAGNQPP AMESSSNTNR AHMWPFGGGG GGGGAGAGAA  300
THFMAGTGFS FPMDQYRGSP LQLGSFLAQP QQQQPNQNLG LSMPDSNLGV LAALNAAYSR  360
GGNANAEQVN NAVEHQEKPQ QSDQDDDSRD ENSNSDE
Functional Description ? help Back to Top
Source Description
UniProtCan specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676709390
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009113333.10.0PREDICTED: transcription factor TCP8
SwissprotQ9C5181e-174TCP8_ARATH; Transcription factor TCP8
TrEMBLA0A1J3H9R60.0A0A1J3H9R6_NOCCA; Transcription factor TCP8
STRINGBra027886.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102182433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.11e-137TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]