PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676708482
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 191aa    MW: 21812.7 Da    PI: 5.1759
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676708482genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.21.4e-152978255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                y+GVr++    +Wv+e+r+p+    + +r++lg++ tae+Aa+a++ a + l+g
  676708482 29 IYRGVRRRN-GDKWVCEVREPV----HqRRVWLGTYPTAEMAARAHDVAVLVLRG 78
               69****877.9*********63....56*********************999988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.72E-262888No hitNo description
PfamPF008477.7E-112878IPR001471AP2/ERF domain
PROSITE profilePS5103221.8782986IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-282988IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-202988IPR016177DNA-binding domain
SMARTSM003808.1E-242992IPR001471AP2/ERF domain
PRINTSPR003677.5E-83041IPR001471AP2/ERF domain
PRINTSPR003677.5E-85268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0016049Biological Processcell growth
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MENNENVHVE MKPKKRAGRR IFKETRHPIY RGVRRRNGDK WVCEVREPVH QRRVWLGTYP  60
TAEMAARAHD VAVLVLRGRS ACLNFSDSAW RLPTPESTDP DTIRRTAAEA AEMFRPQEFS  120
SEITVLPSCG DGGELATLEE GEGVAGMMMR LAEEPLMSPP RSYIDMNMSP PDTSVYVDEE  180
MGYEEFSLWS Y
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00104PBMTransfer from AT1G63030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676708482
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009112988.11e-117PREDICTED: dehydration-responsive element-binding protein 1E
SwissprotQ9SGJ61e-108DRE1E_ARATH; Dehydration-responsive element-binding protein 1E
TrEMBLA0A078IEC91e-116A0A078IEC9_BRANA; BnaA09g10730D protein
TrEMBLA0A397XY931e-116A0A397XY93_BRACM; Uncharacterized protein
TrEMBLM4EFQ01e-116M4EFQ0_BRARP; Uncharacterized protein
STRINGBra027612.1-P1e-117(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35528187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63030.21e-105ERF family protein