PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676700830
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family TCP
Protein Properties Length: 275aa    MW: 29580.1 Da    PI: 6.7663
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676700830genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP116.63.1e-3630104274
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..e 74 
                ++ k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ ++pai+e+tgt++ +a ++  +
  676700830  30 PVSKRPSKDRHTKVEGRGRRIRMPAGCAARIFQLTRELGHKSDGETIRWLLERSEPAIIEATGTGTVPAIAVsvN 104
                5689************************************************************88888444321 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.4E-2936112IPR005333Transcription factor, TCP
PROSITE profilePS5136927.7763690IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031347Biological Processregulation of defense response
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MKEEENDPVR QQEVGFLQPM TDSLVGQRKP VSKRPSKDRH TKVEGRGRRI RMPAGCAARI  60
FQLTRELGHK SDGETIRWLL ERSEPAIIEA TGTGTVPAIA VSVNGTLKIP SDSQPQVECN  120
GGPGDLTMKR RKRNCTSEFV DVNGQDSSVT SGLAPITASS YGFNLINAAN TQNFMPFWPT  180
AFVTGGPNQM GHMWALPTVA AAAAAPSFLN VGTRPVDSYV SNASDAEQQM ETSCGGGAAT  240
QTLRDFTLEI YDKKELQFLG GSGNNNTSPS SCPET
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00007PBMTransfer from 495258Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676700830
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401898.11e-154transcription factor TCP19
RefseqXP_024012296.11e-154transcription factor TCP19
SwissprotQ9LT891e-119TCP19_ARATH; Transcription factor TCP19
TrEMBLV4NBQ01e-152V4NBQ0_EUTSA; Uncharacterized protein
STRINGXP_006401898.11e-153(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125832530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.21e-119TCP family protein