PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011102158.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family AP2
Protein Properties Length: 433aa    MW: 47379.5 Da    PI: 8.6991
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011102158.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.61.1e-16157206155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  XP_011102158.1 157 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAVKFRG 206
                     78*******************......55**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-15157215IPR016177DNA-binding domain
PfamPF008472.5E-8157206IPR001471AP2/ERF domain
PROSITE profilePS5103217.714158214IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-17158214IPR001471AP2/ERF domain
CDDcd000189.73E-11158216No hitNo description
SMARTSM003801.1E-31158220IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MLDLNVDAGL SVESASCEDE NDRKVTNTGD ADSVTSTTTN NNVAFAADEL DSNSSTRRSA  60
VPTLNFSILH RNVIDIDHDV NNGVARNMTE LQLFPVGASC SLPAMDRANY WLNLSAMEVS  120
GGGGAELGIF KAQVPPNNQL QKPPAKKSRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK  180
QVYLGGFDTA HAAARAYDRA AVKFRGVDAD INFNITDYEE DMKQMKNLTK EEFVQILRRQ  240
NTGFSRGSSK YRGVSLHKYG LREAHMGQFL GEKDHDKAAV TNFMPGNYKG EINRISTDGG  300
SGRNLDLNLG ISLASDGPQR NGTTNNLHFA YASYELPDGK RVKVEASSAS SHGLVITTRY  360
APIGAGIFYG ISPNSEERPT GTRTEAIHLP GFSSWPWQRQ IHGLVDTAPL LSSAASSRFS  420
STTSPYSKTP PSH
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011102158.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011102158.10.0ethylene-responsive transcription factor RAP2-7 isoform X1
TrEMBLA0A2G9HWF30.0A0A2G9HWF3_9LAMI; Uncharacterized protein
STRINGMigut.F01790.1.p1e-143(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.12e-72related to AP2.7