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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011100794.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | CAMTA | ||||||||
Protein Properties | Length: 875aa MW: 98969.6 Da PI: 7.2089 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 137.6 | 3.9e-43 | 10 | 93 | 35 | 118 |
CG-1 35 ksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118 +sg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e+nptf rrcywlL+++le+ivlvhy+e++ XP_011100794.1 10 TSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDNPTFVRRCYWLLDKSLEHIVLVHYRETQ 93 79*******************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 61.923 | 1 | 98 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 9.5E-48 | 1 | 93 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.3E-36 | 10 | 91 | IPR005559 | CG-1 DNA-binding domain |
SuperFamily | SSF81296 | 2.99E-9 | 328 | 413 | IPR014756 | Immunoglobulin E-set |
CDD | cd00204 | 1.19E-13 | 512 | 622 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 4.7E-15 | 513 | 625 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 3.11E-16 | 513 | 626 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 14.345 | 521 | 595 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 11.434 | 563 | 595 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 5.1E-6 | 563 | 592 | IPR002110 | Ankyrin repeat |
Pfam | PF00023 | 8.6E-5 | 564 | 594 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF52540 | 1.04E-6 | 670 | 777 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
PROSITE profile | PS50096 | 7.163 | 711 | 737 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 14 | 726 | 748 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.089 | 730 | 756 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0012 | 749 | 771 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 10.091 | 750 | 774 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 9.4E-4 | 751 | 771 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 35 | 829 | 851 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.114 | 831 | 859 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 875 aa Download sequence Send to blast |
MRFMPYSVTT SGTIVLFDRK MLRNFRKDGH NWKKKKDGKT VKEAHEHLKV GNEERIHVYY 60 AHGEDNPTFV RRCYWLLDKS LEHIVLVHYR ETQELQGSPA TPVNSNSNSA GSDLSATWPM 120 SEESDSAVDR VYYGSTGSYL ECHDSVTVKH HEQRLYEINT LEWDELLVPD DPHRLITRQQ 180 GTTAGFELQN QYQMNSYRIN DDAPSNNKVS PECSTNSFSE PVAGRSSINY TSPNNMSYQT 240 VEQDTIVNSE TMVSGLMPSG GAGSLYNLGK DGLQSQDSFG RWVTHIIAES PESVDDHTLE 300 SSNLAGHQSS TYPLMDSHDS SPLGPIFTIT DVSPAWALST EETKILVVGF FNEGQLPYSE 360 SKLYLACGDS LLPVDVVQAG VFRCLIPPQA PKLGNLYITF DGHKPISQVL TFEIRAPVQP 420 GTVSFENKTD WEEFQLQMRL AHLLFSSSKG LSIYSTKLSP TALKEAKAFA QKTSHISDGW 480 LHMAKVIEDT KMSFPQAKDK LFELTLQNRL QEWLLEKVVA GCKISERDEQ GLGVIHLCSI 540 LGYTWAVYPY SWSGLSLDYR DKFGWTALHW AAYYGREKMV ATLLSAGAKP NLVTDPTSQN 600 PGGCSAHDLA SKNGYDGLAA YLAEKALVAQ FDDMTLAGNV SGSLQTTTNE TVNPGNFSED 660 ELYLKDTLAA YRTAADAAAR IQTAFREHSL KIRTKVVESS NPELEARNIV AAMKIQHAFR 720 NYETRKKIVA AARIQHRFRT WKIRKEFLNM RRQAIKIQAM FRGFQVRRQY RKIVWSVGVL 780 EKAILRWRLK RKGFRGLQVQ PAETPREPNE ESDVEEDFFQ ASRKQAEERV EQSVVRVQAM 840 FRSKQAQEAY RRMKLEHNKA KLEYEGLLHP DLQMG |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00435 | DAP | Transfer from AT4G16150 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011100793.1 | 0.0 | PREDICTED: calmodulin-binding transcription activator 5-like isoform X4 | ||||
Refseq | XP_011100794.1 | 0.0 | PREDICTED: calmodulin-binding transcription activator 5-like isoform X4 | ||||
Swissprot | O23463 | 0.0 | CMTA5_ARATH; Calmodulin-binding transcription activator 5 | ||||
TrEMBL | A0A022RYH3 | 0.0 | A0A022RYH3_ERYGU; Uncharacterized protein | ||||
STRING | VIT_05s0077g01240.t01 | 0.0 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16150.1 | 0.0 | calmodulin binding;transcription regulators |