PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011100356.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C3H
Protein Properties Length: 397aa    MW: 44489.9 Da    PI: 7.9017
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011100356.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.93e-07131151526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C+ f++ G+C+ Gd+C F+Hg
  XP_011100356.1 131 VCSEFRK-GHCSKGDNCEFSHG 151
                     7******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.8E-5126152IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.225127153IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.81E-5128151IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-4130153IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-5131151IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.165161185IPR000571Zinc finger, CCCH-type
SMARTSM003562.7161184IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010187Biological Processnegative regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MMGSVCAEQQ HKFHHSHQLY LTKKSLREID IPPRKLLSRR SSAPSPSPAD MSFMMDSPKA  60
EDTVFSKFLP CNNLDDDDSD PYSSDHFRMY EFKVRKCNRS RSHDWTDCPF AHPGEKARRR  120
DPRRYHYSGT VCSEFRKGHC SKGDNCEFSH GVFECWLHPT RYRTEACKDG KNCKRKVCFF  180
AHSTRQLRIL PETSPPHSPR MNSPTTMEKK YRSLNQCCLF CHSMTASPTS TLMGNMSHAS  240
PPLSPPISPV CSSDFSLYGD RYGNIEAYGD RFGNLGSCCT LPKLNGGGGT GMSYKDALTE  300
LMASFEAMNV NHEAVSSPAA VSSGNLPWLD VNFNVEEQPQ FLLSPSTPTP TATAASRGHG  360
KFFHGEFSGR NLMEDSRYNS ESNLAGPDLG WVNDLLT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269|PubMed:18487351}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011100356.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100356.10.0zinc finger CCCH domain-containing protein 2-like
SwissprotQ9ZWA16e-83C3H2_ARATH; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A2G9HCH71e-179A0A2G9HCH7_9LAMI; CCCH-type Zn-finger protein
STRINGXP_009789499.11e-152(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA105952125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.13e-75C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chang G, et al.
    AFP2 as the novel regulator breaks high-temperature-induced seeds secondary dormancy through ABI5 and SOM in Arabidopsis thaliana.
    Biochem. Biophys. Res. Commun., 2018. 501(1): p. 232-238
    [PMID:29723526]