PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011100355.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ERF
Protein Properties Length: 221aa    MW: 23634.5 Da    PI: 9.3537
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011100355.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.62.4e-212271255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +y+GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa+a++aa+++++g
  XP_011100355.1 22 HYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDAAAREFRG 71
                    6********.**********8...557*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.7E-402285IPR001471AP2/ERF domain
PROSITE profilePS5103224.4212279IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-332279IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-232280IPR016177DNA-binding domain
PfamPF008478.3E-152271IPR001471AP2/ERF domain
CDDcd000181.30E-182279No hitNo description
PRINTSPR003671.3E-112334IPR001471AP2/ERF domain
PRINTSPR003671.3E-114561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016604Cellular Componentnuclear body
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MAMKEKASGG NAKVVNGVKE VHYRGVRKRP WGRYAAEIRD PGKKSRVWLG TFDTAEEAAR  60
AYDAAAREFR GPKAKTNFPL PSEAAHSPSQ SSTVESSSAD LNPRAPVELD LTRRLGANPE  120
TGVTVAEAGG LNPINAYQFF RRPPAMAVLP NGQPVFLFEP MVKPGMAAAY RTNQAGAGFP  180
RGGALQSESD TSSVVDENNF DGPDGKRGLD LDLNLPPPVE A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-222280261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A8e-221980264ATERF1
3gcc_A8e-221980264ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00623PBMTransfer from PK19363.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011100355.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100355.11e-160ethylene-responsive transcription factor 4-like
SwissprotQ9LW493e-73ERF4_NICSY; Ethylene-responsive transcription factor 4
TrEMBLA0A2G9HCE21e-132A0A2G9HCE2_9LAMI; Uncharacterized protein
STRINGMigut.M00159.1.p2e-94(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53170.12e-27ethylene response factor 8