PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011100103.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 337aa    MW: 37155.3 Da    PI: 5.0883
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011100103.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.6e-12162207555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h ++Er+RR+++ ++f  L +++P +     kK++K ++L  +++Y+k+Lq
  XP_011100103.1 162 HIMAERKRREKLSQRFLALSSMVPGL-----KKMDKTSVLGDTIKYLKYLQ 207
                     999***********************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.269157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.03E-16158219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16162218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-9162207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.35E-11162211No hitNo description
SMARTSM003534.6E-14163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MQEDSRMSSD QCEFMDYMDE ELAAILAEDF PGSLSPAGSD SSSSSTLITA PGTINSAAAN  60
LCTEPPKVLG LEQPAKERKP NNFSNFSSVK DIDGASSAPV ILNFGNANSP ENCRQAPLVV  120
LDPDKEAVVS EVFINEASRI EKRDGKGNKP RRLRPPSQTY DHIMAERKRR EKLSQRFLAL  180
SSMVPGLKKM DKTSVLGDTI KYLKYLQERV KTLEDQAAKQ TVDSVVFVKR SRIMEDEGSS  240
YEKNRESDEL SSLPEIEARV CDRSILLKIL CEKSKDVLVK VLAEVEKLNL AVVNTSVTPF  300
GSLALDITII AQMDKEMRVT AKDMVTTLRS ALQSAAN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165170ERKRRE
2166171RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011100103.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100103.20.0transcription factor bHLH18-like isoform X1
SwissprotQ9T0724e-54BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A2G9I4F11e-119A0A2G9I4F1_9LAMI; Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17602461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-48bHLH family protein