PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011099630.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB_related
Protein Properties Length: 86aa    MW: 9707.6 Da    PI: 9.4883
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011099630.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.96.3e-101659344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT+   +++ +a + + ++   +W  Iar +g g++++++k ++
   XP_011099630.1 16 SWTPKQNKQFEKALAVYDKDtpdRWQNIARAVG-GKSAEEVKRHY 59
                     7********************************.**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.5251267IPR017884SANT domain
SMARTSM007171.8E-81365IPR001005SANT/Myb domain
SuperFamilySSF466892.61E-131571IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-61669IPR009057Homeodomain-like
PfamPF002491.6E-71659IPR001005SANT/Myb domain
CDDcd001676.23E-71759No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MASNSLSSSS NSSSSSWTPK QNKQFEKALA VYDKDTPDRW QNIARAVGGK SAEEVKRHYE  60
ILVEDLKHIE SGNYPFPNYR TNGNSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-36883277RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011099630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099630.13e-58protein RADIALIS-like 3
SwissprotQ1A1737e-36RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2R6PAP85e-42A0A2R6PAP8_ACTCH; Protein RADIALIS-like
STRINGPOPTR_0005s12390.12e-42(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.13e-35RAD-like 1