PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011099388.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB_related
Protein Properties Length: 326aa    MW: 35670.4 Da    PI: 6.79
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011099388.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.93.5e-11556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT+eE+  l+ +++++G g W+tI +          R+  ++k++w+++
   XP_011099388.1  5 KQKWTAEEEGALKAGIHKYGIGKWSTILKDPEfstvlRSRSNVDLKDKWRNL 56
                     79************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.281163IPR017930Myb domain
SuperFamilySSF466891.95E-15258IPR009057Homeodomain-like
SMARTSM007171.8E-5459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-13556IPR009057Homeodomain-like
PfamPF002494.6E-7556IPR001005SANT/Myb domain
CDDcd116601.65E-19657No hitNo description
SMARTSM005261.5E-13118183IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150423.36120188IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467857.07E-15122190IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.1E-15123189IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005383.5E-11126181IPR005818Linker histone H1/H5, domain H15
CDDcd000735.59E-10128182No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MGAPKQKWTA EEEGALKAGI HKYGIGKWST ILKDPEFSTV LRSRSNVDLK DKWRNLNCMA  60
NGLGSRHRAR VASKSNQLTA KQDEDTIVPS SMVDKDSEII NVTSLGASSE ISHDAGLRKQ  120
ISRLDDHILE AITKLKEPRG SSRPAIAQYI EEHYSAPPDF ERTLAASLKV LTDNGRLVKV  180
KHQYRIAPRS VSLVSGKEPQ LLLENGAKKD PSEAERNSVI LLTKAKIDAE LEKMKSMSAE  240
EAAAAAAQAV AEAEAAIAEA EAAAREAEEA EAEAEAAQCF ADAAQKALIC QTIRVCMTLN  300
YTCLTLYLNP TNNSGDLWLF QLVRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011099388.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099387.10.0telomere repeat-binding factor 1 isoform X3
TrEMBLA0A2G9H8J91e-150A0A2G9H8J9_9LAMI; Uncharacterized protein
STRINGMigut.H00343.1.p1e-133(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.33e-68telomere repeat binding factor 1