PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011099355.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family LBD
Protein Properties Length: 215aa    MW: 23478.1 Da    PI: 7.9961
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011099355.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.33.2e-302103197
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C++lr++C++ C+l+p++     +++q +++ +v+k+FG++ ++++++a+pe++r+++++sl++eA  r+ +Pv+Gavg++++++++++q+
  XP_011099355.1   2 SCNGCRILRKGCSETCILRPCLqwiesAEAQGHATVFVAKFFGRAGLMSFISAVPENQRPALFQSLLFEAAGRTVNPVNGAVGLLWTGNWHVCQA 96 
                     6*********************9999777889*************************************************************** PP

          DUF260  91 kaelall 97 
                     ++e++l+
  XP_011099355.1  97 AVETVLR 103
                     *999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.5991107IPR004883Lateral organ boundaries, LOB
PfamPF031956.3E-262101IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006807Biological Processnitrogen compound metabolic process
GO:0060776Biological Processsimple leaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MSCNGCRILR KGCSETCILR PCLQWIESAE AQGHATVFVA KFFGRAGLMS FISAVPENQR  60
PALFQSLLFE AAGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGALKPI PEFMGGESEP  120
DDASECTDMF KLQDPSLSPR PKVQKRRRFP DEPAKVMQLA DLDLSLTPGF QGKKMSPSAA  180
KRRLGSPSMN SEESLMTTCG DHHPATEIKL LNLFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140146PKVQKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011099355.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099355.11e-159LOB domain-containing protein 37-like
SwissprotQ9FN114e-84LBD37_ARATH; LOB domain-containing protein 37
TrEMBLA0A2G9HZ721e-137A0A2G9HZ72_9LAMI; Uncharacterized protein
STRINGXP_009626676.11e-116(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9662490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.12e-86LOB domain-containing protein 37
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]