PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011098625.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ZF-HD
Protein Properties Length: 325aa    MW: 34977.9 Da    PI: 8.632
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011098625.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer68.21.5e-214790345
     ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaA 45
                     v+YkeClkNhAa+lGgha+DGCgEfmps+ ++ +++++lkCaA
  XP_011098625.1 47 VVTYKECLKNHAAALGGHALDGCGEFMPSPASNpAEPTSLKCAA 90
                    589****************************999*********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.0E-164890IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015667.8E-204990IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152320.05550101IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-95091IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.01E-19170238IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-30173239IPR009057Homeodomain-like
TIGRFAMsTIGR015657.3E-27177234IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MELGNSTVKT PEADTETPTR IQPAKPSPFT NGVLKRHAPL HLHHPVVVTY KECLKNHAAA  60
LGGHALDGCG EFMPSPASNP AEPTSLKCAA WPPQAPALEY QPHHRHHPPP PPPRGNSGSS  120
PNNSPSPPPI SSSYYPSAPH MLLALSHGLS GPPPDNNTPI PTTINAASAT LLNSGSRKRF  180
RTKFTQDQKE KMHEFAEKVG WKMQKRDEDV ISEFCREIGV DKGVFKVWMH NNKNTFAKKD  240
QPAPHLSNNS TTIAISTPPA ATTNGNGINY SAMSSAAAAY QHQREGNSEI KLQNIHGQEM  300
NENQLHDSSS GHHVLGANGG SSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A9e-211762351675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011098625.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098625.10.0zinc-finger homeodomain protein 9-like
SwissprotQ9LXG03e-64ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A2G9I3Z91e-131A0A2G9I3Z9_9LAMI; Uncharacterized protein
STRINGXP_009787877.12e-84(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.15e-52homeobox protein 34
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]