PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011097516.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family LBD
Protein Properties Length: 174aa    MW: 19141.4 Da    PI: 5.6782
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011097516.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260137.25.9e-4311109199
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrrkC ++C++apyfp e+p kfanvhk+FGasnv+kll+++ +++reda++sl+yeAear++dPvyG+vg i+ lq+q+ ql++el+
  XP_011097516.1  11 PCAACKFLRRKCLSGCIFAPYFPPEEPTKFANVHKIFGASNVSKLLNEILPHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVLQLQKELD 105
                     7*********************************************************************************************9 PP

          DUF260  96 llke 99 
                     ++++
  XP_011097516.1 106 ATNA 109
                     9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.05910111IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-4211108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MASSSSYSNP PCAACKFLRR KCLSGCIFAP YFPPEEPTKF ANVHKIFGAS NVSKLLNEIL  60
PHQREDAVNS LAYEAEARLK DPVYGCVGAI SVLQRQVLQL QKELDATNAD LMRYTNLVMN  120
TTQRRSFDDH NRVNVGYGGG SDSFDPNPGY PVPYYCPSWS NGPPGENPET GGDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-6221152115LOB family transfactor Ramosa2.1
5ly0_B2e-6221152115LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011097516.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097516.11e-129LOB domain-containing protein 25-like
SwissprotQ8L8Q35e-68LBD25_ARATH; LOB domain-containing protein 25
TrEMBLA0A1S4D3Q48e-81A0A1S4D3Q4_TOBAC; LOB domain-containing protein 25-like isoform X1
TrEMBLA0A1U7VF658e-81A0A1U7VF65_NICSY; LOB domain-containing protein 25-like isoform X1
STRINGXP_009766717.11e-81(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27650.12e-70LOB domain-containing protein 25
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]