PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011097229.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family HD-ZIP
Protein Properties Length: 215aa    MW: 25025 Da    PI: 6.2681
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011097229.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.21.8e-2063115456
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     ++++++eq + Le+ F +++++  e++e+LA++lgL+ rqV vWFqNrRa+++
  XP_011097229.1  63 KRKLSEEQANMLEKSFGSEHKLESERKERLAAELGLDPRQVAVWFQNRRARWR 115
                     45899***********************************************9 PP

2HD-ZIP_I/II113.61.2e-3662153293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     +kr+ls+eq+++LE+sF +e+kLe+erK++la eLgl+prqvavWFqnrRAR+++k+lE+++++L++++d+   e++rLe+e  +++e+l+e
  XP_011097229.1  62 RKRKLSEEQANMLEKSFGSEHKLESERKERLAAELGLDPRQVAVWFQNRRARWRSKKLEEEFSKLRSHHDSTLIEKSRLETELVKVKEQLQE 153
                     8****************************************************************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.00657117IPR001356Homeobox domain
SMARTSM003894.6E-1960121IPR001356Homeobox domain
CDDcd000862.27E-1562118No hitNo description
PfamPF000468.1E-1863115IPR001356Homeobox domain
SuperFamilySSF466891.2E-1763126IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-2067117IPR009057Homeodomain-like
PRINTSPR000314.5E-68897IPR000047Helix-turn-helix motif
PROSITE patternPS00027092115IPR017970Homeobox, conserved site
PRINTSPR000314.5E-697113IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MMINPEFDDQ MVLISGQYYP VGIISQFVQE QGAAVEESKP RRRRRKKNGG GGDGDGEAVM  60
MRKRKLSEEQ ANMLEKSFGS EHKLESERKE RLAAELGLDP RQVAVWFQNR RARWRSKKLE  120
EEFSKLRSHH DSTLIEKSRL ETELVKVKEQ LQEAEKEIQR LSERWDHGFS SNSPSSSTNM  180
EQPPLLGFEG LENVFCVPHD NSYGHGFEWD NFYYL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14046RRRRRKK
24464RKKNGGGGDGDGEAVMMRKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097229.11e-159PREDICTED: homeobox-leucine zipper protein ATHB-40-like
SwissprotO232083e-61ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLK4BB742e-73K4BB74_SOLLC; Uncharacterized protein
STRINGSolyc02g085630.2.16e-73(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12892480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.15e-54homeobox protein 40