PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011096678.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family HD-ZIP
Protein Properties Length: 852aa    MW: 93390.5 Da    PI: 6.1417
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011096678.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-182583357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_011096678.1 25 KYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECpilaNIEPKQIKVWFQNRRCREKQ 83
                    6789*****************************************************97 PP

2START161.27.9e-511733802204
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e++ ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++  ++  +i +g  g+++l 
  XP_011096678.1 173 IAEETLTEFLGKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRLSWFRDCRCLDVASAIPTGngGTIELV 266
                     6899******************************************************.8999999999************************** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++ +a+++l++ Rdf+++Ryi +l++g++vi+++S++s +  p+      +vRae+lpSg+li+p+++g+s +++v+h+d ++++++++lr+l+
  XP_011096678.1 267 YMQIYAPTTLASaRDFWTLRYITSLEDGSLVICERSLTSSTGGPTgppATCFVRAEMLPSGYLIRPCEGGGSIIHIVDHIDFDASSVPEVLRPLY 361
                     ****************************************99999888889******************************************** PP

                     HHHHHHHHHHHHHHTXXXX CS
           START 186 ksglaegaktwvatlqrqc 204
                     +s+ + ++k+++a+l++ +
  XP_011096678.1 362 ESSKILAQKMTMAALRHIR 380
                     ***************9865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-19580IPR009057Homeodomain-like
PROSITE profilePS5007115.6292084IPR001356Homeobox domain
SMARTSM003893.8E-162288IPR001356Homeobox domain
CDDcd000869.57E-172385No hitNo description
PfamPF000462.8E-162583IPR001356Homeobox domain
SuperFamilySSF466892.95E-162587IPR009057Homeodomain-like
CDDcd146861.81E-677116No hitNo description
Gene3DG3DSA:1.20.5.1709.2E-481130No hitNo description
PROSITE profilePS5084824.309163391IPR002913START domain
CDDcd088752.50E-68167383No hitNo description
Gene3DG3DSA:3.30.530.208.9E-20171377IPR023393START-like domain
SMARTSM002348.9E-46172382IPR002913START domain
PfamPF018522.8E-48173380IPR002913START domain
SuperFamilySSF559612.47E-35173384No hitNo description
PfamPF086704.6E-49707851IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 852 aa     Download sequence    Send to blast
MALSMHRDSN SSGSNSKQQQ MDPSKYVRYT PEQVEALERV YAECPKPSSL RRQQLIRECP  60
ILANIEPKQI KVWFQNRRCR EKQRKEASRL QTVNRKLTAM NKLLMEENDR LQKQVSQLVY  120
ENGYMRQQLH TVSTTTTDTS CDSVVMSGQQ QQQNPTPQHP QRDANSPAGL LAIAEETLTE  180
FLGKATGTAV DWVQMIGMKP GPDSIGIVAV SRNCSGVAAR ACGLVSLEPT KVAEILKDRL  240
SWFRDCRCLD VASAIPTGNG GTIELVYMQI YAPTTLASAR DFWTLRYITS LEDGSLVICE  300
RSLTSSTGGP TGPPATCFVR AEMLPSGYLI RPCEGGGSII HIVDHIDFDA SSVPEVLRPL  360
YESSKILAQK MTMAALRHIR QIAQETNGEI QYTGGRQPTV LRALSQRLCR GFNDAVNGFV  420
DDGWSIMGSD GVEDVTIAIN SSPSKFLGSQ YNNLSMLPTF GGVLCARASM LLQNVPPALL  480
VRFLREHRSE WADYGVDVYS AASLKASPYA VPCAKLGGFP SSQVILPLAQ TVEHEEFLEV  540
VRLEGHAFSP EDIALSRDMY LLQLCSGIDE TTSGACAQLV FAPIDESFGD DAPVLPSGFR  600
VIPLEPKSDG PTATRTLDLA SALEVGHSGA RSGGEADTSN QNFRSVLTIA FQFTFENHYR  660
DSVAAMARQY VRSIVGSVQR VAMAIAPSQL SSQMVPKPLP GSPEAVTLAR WICRSYRVHT  720
GGELLQADSS AGDAVLKQLW HHTDAIMCCS VRMNASAVFT FANQAGLDML ETTLVALQDI  780
MLEKILDEAG RKILLSEFSK IMQQGFAYLP GGVCVSSMGR PVSYEQAVAW KVVNDEDANH  840
CLAFMFMNWS FV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011096678.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096678.10.0homeobox-leucine zipper protein ATHB-14 isoform X2
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A4D9B1U80.0A0A4D9B1U8_SALSN; Homeobox-leucine zipper protein
STRINGXP_009612341.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]