PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011096282.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB_related
Protein Properties Length: 465aa    MW: 52142.3 Da    PI: 10.6096
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011096282.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.74.6e-071347338
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlk 38
                      W t+E+++l  av ++G+++W+ +a++++  Rtl+
   XP_011096282.1 13 GWGTWEELILGGAVLRHGTRDWNVVASELQ-ARTLY 47
                     5*****************************.9*987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM002974.4E-1579358IPR001487Bromodomain
SuperFamilySSF473701.23E-17246357IPR001487Bromodomain
Gene3DG3DSA:1.20.920.103.3E-16249356IPR001487Bromodomain
CDDcd043695.26E-7260353No hitNo description
PfamPF004392.0E-10263342IPR001487Bromodomain
PROSITE profilePS5001410.263269339IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MGAEAAVLGP KTGWGTWEEL ILGGAVLRHG TRDWNVVASE LQARTLYPHS FTPEVHILAW  60
FEELRKRRVA ELKRELARSE DSIGSLESKI KSLEAEKQSS NHADYGSSQT ESPLPALNSD  120
GTESSGKEVS KDEYSAGSFT KDTRTRTSWL CERHPQEMET DTKPDVSVSS EQDKDLSIGK  180
VVGVGYGQGV TIRKRRGQRK RKDCNRAVKE ASVGESDNLG SYNITSTTQK EASTTDCAQT  240
IRDSCINNRN GGSHTVKRHN LMEIFQSVAR SEPAAVFRHR MDSQKRARYR KVIKQHLDIG  300
TIRSRIMGQS IKSAKELFRD LLLLANNALV FYSRRTREYK SALCLRQLVM KEYKQQCRGS  360
CQEATSAFLP FNPPVKPRSA RARPRPRPPS CKEKVASEKL LPNAEKVVPP SNPKTSEKPC  420
TDKNVSLKSL LKPKKGMKRP GKGKPELADT RPKTSPVKQR KRVRK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1432438PKKGMKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011096282.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096283.10.0uncharacterized protein LOC105175520 isoform X2
TrEMBLA0A2G9HQF00.0A0A2G9HQF0_9LAMI; Uncharacterized protein
STRINGMigut.H01498.1.p1e-165(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.19e-16DNA-binding bromodomain-containing protein