PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011095222.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GRAS
Protein Properties Length: 482aa    MW: 54708.7 Da    PI: 4.2887
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011095222.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS146.92e-451234813373
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     +l+ +  ea+++g++el++ +++ ++e  +p g++m+R+a  + +  +++              +++   +s++ +aa+k++++  P  +f+h+t
  XP_011095222.1 123 HLMRAYGEAMDNGEKELVDVIVKSINEKTNPLGNTMERVAYNLFQSTENQGEY----------LRQE---SSKNFVAAFKVLYQSIPNGRFAHFT 204
                     6666778999******************************9888777766554..........3333...378999******************* PP

            GRAS  98 aNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     aN+aIle+v  e   + i+Dfd+++G+QWp+L++aL+ +++    lR+T v+s+e+   s  + e  ++rL   A + gv+++++    k++ed+
  XP_011095222.1 205 ANSAILESVPDEaAIIQIVDFDMGEGIQWPPLIEALSRKQK---ALRLTSVKSEEECtsSCWNFEDAKKRLLAHAGQYGVKLQIEE---KSIEDF 293
                     *********9995666********************99755...5********88878888899********************98...9***** PP

            GRAS 190 eleeLrvkp....gEalaVnlvlqlhrlldesvsleserdevLklvkslsPk...vvvvveqeadh..nse.sFlerflealeyysalfdsleak 274
                      +e +r+k+    +E l+ n+++ l ++ + + s +s   +++k+ ++l ++   ++++ + ea    n+  s+   f + +++y a+f+sle +
  XP_011095222.1 294 AFELMRMKKrgqgREWLVFNCMVGLPHMGR-RRSRSS-VAHFVKVARELLANlkgILTFGDGEAGEslNTCcSYTSYFDNLIRHYQAIFESLEGS 386
                     ********999999**************83.333333.79*********99855589****997763444369********************** PP

            GRAS 275 lpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdr 365
                     +p    e+r+ +E  +l++    + +  g +  ++ e++ k r++  e  ++  +ls++  ++ak ++++ + + yrv     +++++vl Wk+ 
  XP_011095222.1 387 FPVYLaEARTAMESLFLAP----LMSPTGWS--MDWEEMTKGRDQA-ETQLEGRKLSQESLAEAKQIVNERE-NSYRVTierLRENEMVLRWKET 473
                     **88769999999998776....45556665..5667777777775.457999*******************.448888534459********** PP

            GRAS 366 pLvsvSaW 373
                     pLv vS W
  XP_011095222.1 474 PLVRVSTW 481
                     ******** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098519.75695482IPR005202Transcription factor GRAS
PfamPF035146.9E-43123481IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MDFCGIDDSD FSCSFTSLEE CSAISSSNSY VPNMFPDEFF DLETLVEDIQ IYPAMDGFET  60
IPTEEIEDIC EWINGNDAEG NELSPCLSLE SGQNSIVSPF MDEMSLLLPA DEMQVDDQLA  120
LLHLMRAYGE AMDNGEKELV DVIVKSINEK TNPLGNTMER VAYNLFQSTE NQGEYLRQES  180
SKNFVAAFKV LYQSIPNGRF AHFTANSAIL ESVPDEAAII QIVDFDMGEG IQWPPLIEAL  240
SRKQKALRLT SVKSEEECTS SCWNFEDAKK RLLAHAGQYG VKLQIEEKSI EDFAFELMRM  300
KKRGQGREWL VFNCMVGLPH MGRRRSRSSV AHFVKVAREL LANLKGILTF GDGEAGESLN  360
TCCSYTSYFD NLIRHYQAIF ESLEGSFPVY LAEARTAMES LFLAPLMSPT GWSMDWEEMT  420
KGRDQAETQL EGRKLSQESL AEAKQIVNER ENSYRVTIER LRENEMVLRW KETPLVRVST  480
WV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-1318048172374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011095222.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095222.10.0nodulation-signaling pathway 2 protein-like
TrEMBLA0A2G9H7780.0A0A2G9H778_9LAMI; Uncharacterized protein
STRINGMigut.J00119.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53611938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.17e-27GRAS family protein