PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011094569.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family LBD
Protein Properties Length: 161aa    MW: 16403.5 Da    PI: 8.0729
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011094569.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.11.9e-40361361100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll+++p ++r da+ +++yeA+ r+rdP+yG+v++i++lqqq+ +l++el
  XP_011094569.1  36 PCGACKFLRRKCVAGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLHHIPVQKRLDAVVTICYEAQSRLRDPIYGCVAHIFALQQQVVNLQTEL 130
                     7***********************9989******************************************************************* PP

          DUF260  95 allkee 100
                     ++l+++
  XP_011094569.1 131 SYLQAH 136
                     *99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.90435137IPR004883Lateral organ boundaries, LOB
PfamPF031952.9E-3936134IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MSTTAKVGGS STAAGGGGSS SGSGGGGGGG GGGGGPCGAC KFLRRKCVAG CIFAPYFDSE  60
QGAAHFAAVH KVFGASNVSK LLHHIPVQKR LDAVVTICYE AQSRLRDPIY GCVAHIFALQ  120
QQVVNLQTEL SYLQAHLAAL ELPTPPPATP QHQPQPCESE S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-38321377111LOB family transfactor Ramosa2.1
5ly0_B3e-38321377111LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269|PubMed:19088331}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011094569.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094569.11e-113LOB domain-containing protein 18
SwissprotO813233e-63LBD30_ARATH; LOB domain-containing protein 30
TrEMBLA0A2G9I2062e-68A0A2G9I206_9LAMI; Uncharacterized protein
STRINGXP_009795320.14e-68(Nicotiana sylvestris)
STRINGXP_009604912.14e-68(Nicotiana tomentosiformis)
STRINGGSMUA_Achr5P11330_0012e-68(Musa acuminata)
STRINGXP_010508173.13e-68(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00220.11e-60LBD family protein
Publications ? help Back to Top
  1. Rast-Somssich MI, et al.
    The Arabidopsis JAGGED LATERAL ORGANS (JLO) gene sensitizes plants to auxin.
    J. Exp. Bot., 2017. 68(11): p. 2741-2755
    [PMID:28472464]
  2. Liu C,Yu H,Li L
    SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana.
    PLoS Genet., 2019. 15(1): p. e1007928
    [PMID:30657769]