PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011094312.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 473aa    MW: 52728.8 Da    PI: 6.853
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011094312.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.4e-13303348454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +h e+Er+RR+++N++f  Lr+++P+       +++Ka+ L  Av YIk+L
  XP_011094312.1 303 NHVEAERQRREKLNHRFYALRSVVPNV-----SRMDKASLLSDAVSYIKEL 348
                     799***********************6.....4****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.8E-5328200IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.847299348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-18300363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.28E-14302353No hitNo description
PfamPF000101.1E-10303348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-17303364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-17305354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MDDLIVSPSS SSSILSSVSP HQQLPPTLQK RLQYILQHQP DWWAYAILWQ TSKDDNGRIS  60
LSWADGHFQG TKEKNPKSGS QPERKKVMRG IQALIGENPD ITGPVDGDVT DAEWFYVMSL  120
AQSFSLGDGV VGKAFNSGSL IWLSGGNQLR FYNCQRAKEA QIHGMQTMVC IPTLNGVLEL  180
GSDVMITENW SLVQQVKSLF ESSSDPINNG STHALKFPEK TISFADTCLL PNLPDEAAKT  240
TPVLGKKQEQ PNSKAQKAQI FSYLDSEHSD SDCQFFLPET VETKRTPKKR GRKPNLGRDA  300
PLNHVEAERQ RREKLNHRFY ALRSVVPNVS RMDKASLLSD AVSYIKELKS KVEELETQLQ  360
RESKKVKTET TAETLDNQST TTSVDQVGPI TSLLEVEVKI VGVDGMIRVQ SDNGNYPAAR  420
LMDAIRELEL QVHHASMSCV NDLMLQDVVI RVPDGLRCEK ALKAALIRRL EAQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-36272008192Transcription factor MYC3
4rqw_B4e-36272008192Transcription factor MYC3
4rs9_A4e-36272008192Transcription factor MYC3
4yz6_A4e-36272008192Transcription factor MYC3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011094312.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094312.10.0transcription factor MYC2
TrEMBLA0A142CD180.0A0A142CD18_9LAMI; Transcription factor MYC4
STRINGPOPTR_0002s17750.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.14e-78bHLH family protein