PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011092801.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB_related
Protein Properties Length: 84aa    MW: 9614.63 Da    PI: 7.6969
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011092801.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.32.7e-111358345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT++E +l+ +a +++  +   +W  +ar++g g++++++k ++ 
   XP_011092801.1 13 SWTPQENKLFEKALARFDQDtpdRWQNVAREVGGGKSAEEVKRHYD 58
                     8*****************99************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-5961IPR009057Homeodomain-like
PROSITE profilePS512939.813965IPR017884SANT domain
SMARTSM007175.7E-101063IPR001005SANT/Myb domain
SuperFamilySSF466891.36E-121269IPR009057Homeodomain-like
CDDcd001671.57E-71357No hitNo description
PfamPF002492.3E-91357IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
MASSSLSSRR PDSWTPQENK LFEKALARFD QDTPDRWQNV AREVGGGKSA EEVKRHYDVL  60
MEDLRRIESG HVPIPNYATR NSTP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-26179175RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011092801.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011092801.12e-57protein RADIALIS-like 1
SwissprotQ1A1732e-30RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2G9H3U02e-46A0A2G9H3U0_9LAMI; Uncharacterized protein
STRINGMigut.B00229.1.p7e-42(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.11e-30RAD-like 6