PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011092710.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family LBD
Protein Properties Length: 217aa    MW: 23776.9 Da    PI: 8.5126
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011092710.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26098.28e-312103197
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C+l++ +     p++q++++ +v+k+FG++ ++++l+++pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+
  XP_011092710.1   2 SCNGCRVLRKGCNDNCILRQSLqgidtPQAQANATVFVAKFFGRAGLMSFLSSVPESQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQS 96 
                     6********************************************************************************************** PP

          DUF260  91 kaelall 97 
                     ++e++l+
  XP_011092710.1  97 AVETVLR 103
                     *998775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.0321107IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-262100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MSCNGCRVLR KGCNDNCILR QSLQGIDTPQ AQANATVFVA KFFGRAGLMS FLSSVPESQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQSAVET VLRGGVLGPL PEFSVSDESL  120
ESNNNDLYGS RDLNMRLKRK VFDIENQTTS GLDLRLTASF PARMTAGGRV NRVRNKRRPA  180
SPSDESDTTT LESGIVCHQG SHQNHGHHEA KLLQLFF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011092710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011092710.11e-161LOB domain-containing protein 37-like
SwissprotQ9FN112e-67LBD37_ARATH; LOB domain-containing protein 37
TrEMBLA0A1S4AL071e-105A0A1S4AL07_TOBAC; LOB domain-containing protein 37-like
STRINGXP_009625187.11e-106(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9662490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.13e-68LOB domain-containing protein 37
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]