PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011090856.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family LBD
Protein Properties Length: 201aa    MW: 22044.1 Da    PI: 7.9419
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011090856.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.94.1e-3991091100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++C++apyf ++q +++fa+vh++FGasn +kll ++p+++r da+ +l+yeA ar+rdPvyG+v++i++lqqq+ +l+ael
  XP_011090856.1   9 PCGACKFLRRKCVRGCIFAPYFDSDQgTAHFAAVHRVFGASNASKLLLRIPPHRRLDAVITLCYEALARVRDPVYGCVAHIFTLQQQVVNLQAEL 103
                     7***********************9989******************************************************************* PP

          DUF260  95 allkee 100
                     a+++++
  XP_011090856.1 104 AYIQAR 109
                     *99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.0938110IPR004883Lateral organ boundaries, LOB
PfamPF031954.7E-389107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MSNGGAAGPC GACKFLRRKC VRGCIFAPYF DSDQGTAHFA AVHRVFGASN ASKLLLRIPP  60
HRRLDAVITL CYEALARVRD PVYGCVAHIF TLQQQVVNLQ AELAYIQARI STLQRSPLPP  120
PQHPCLSSPN IRTSSELAGN SSCLQTGIFD PSQSEETSPE MVSFCNAVDQ EVEDIGDLQS  180
LAREYVSRYF PGVRFRPPTS Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-3751037104LOB family transfactor Ramosa2.1
5ly0_B2e-3751037104LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011090856.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090856.21e-148LOB domain-containing protein 19
SwissprotO813224e-68LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A2G9I1Z71e-101A0A2G9I1Z7_9LAMI; Uncharacterized protein
STRINGEOX961946e-94(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.12e-70LOB domain-containing protein 31