PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011090244.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family FAR1
Protein Properties Length: 872aa    MW: 98921.7 Da    PI: 6.8391
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011090244.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR145.72.1e-1459132290
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     fY++YA++vGFs+r++ ++ sk ++  t+r+f Cs  g +++  ++              C+a+l+v+ + ++kw+vtk+++eH+H+++
  XP_011090244.1  59 FYEDYARHVGFSTRVNFNR-SKADRMATSREFLCSGDGLKKRAGES--------------CRAMLRVESKCENKWVVTKFVKEHSHTIV 132
                     9*************99755.569999*************9998777..............**************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-1059132IPR004330FAR1 DNA binding domain
PfamPF105519.2E-28269361IPR018289MULE transposase domain
PfamPF044345.9E-11547581IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.189547583IPR007527Zinc finger, SWIM-type
SMARTSM005755.0E-8558585IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 872 aa     Download sequence    Send to blast
MEERNLVQRG GITDDGDDDS NYSGEMDALG HSLVQDEDGI FAEPHVGMEF DSEDAAKMFY  60
EDYARHVGFS TRVNFNRSKA DRMATSREFL CSGDGLKKRA GESCRAMLRV ESKCENKWVV  120
TKFVKEHSHT IVSHSKVHHL RPKRYFAATT ENVPETFHGV DIVPSGTMYV SVDGNSVPAE  180
MNHVGKNMPA SRLNQSVKNI SALGYTEGYS SRRTLGRDAQ NLLDYFKKMQ AENPGFYYAI  240
QLDDENRMAN AFWADARSRT AYSHFGDAVT LETTYRTNRY TVPFAPFTGV NHHGQIILFG  300
CALLLDESEA TFVWLFKTFL AAMNDRAPVS LTTDKDRAIQ AAVTQVFPEA RHCVNKWHVL  360
REGEEKMAHV CLAHPHFQAE LCNCINMTKT IEEFESFWTS ILDKYDLKRN DWLHSIYDAR  420
RQWVPVYFRD SFFAAVTPSL GFESSFFDGY VNQQTTLPMF FRQYERALEN SFEREVEADF  480
DTICTTPVLR TPSPMEKQAA NLYTKRIFSK FQEELVETFV YTANRVDGDG HNSTYRVAKF  540
EDDHKAYFVS LNIAEMKANC SCKMFEYSGI LCRHVLTVFT VTNVLTLPSH YILKRWTRNA  600
KTMVVADEHS EIQVHESLTT RYNNLCKEAI RFAEEGAIAS ETYISALVSL REVGKKVAGV  660
KKSVARVAPS SSQVSGIGYD DRRPSIVKPE MTPLLWPQQD EIVRRFNLND AGVPGQPISN  720
SNVPRVGSLK RDVGHTDNMV VLPCLKSMTW VMENKNSTPA DRVAVINLKL QDYARTPAGE  780
SEVKFSLSSV TLEPMLRSMA YISEQLSTPA NKVAVINLKL QDTETTSGES EVKFQVSRDT  840
LGAMLRSMAY IREQLSNTVE PRQDNPTKRL RK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011090244.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090244.10.0protein FAR1-RELATED SEQUENCE 3
RefseqXP_011090246.10.0protein FAR1-RELATED SEQUENCE 3
RefseqXP_011090247.10.0protein FAR1-RELATED SEQUENCE 3
RefseqXP_020552429.10.0protein FAR1-RELATED SEQUENCE 3
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A2G9GF540.0A0A2G9GF54_9LAMI; Uncharacterized protein
STRINGMigut.N02416.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]