PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011089912.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family HD-ZIP
Protein Properties Length: 839aa    MW: 91852.7 Da    PI: 6.1236
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011089912.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.42.5e-182482357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_011089912.1 24 KYVRYTAEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 82
                    56789****************************************************97 PP

2START158.35.9e-501633682202
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+++sg a+ra+g+v  +++   +e+l+d++ W +++++ e+      g  g+++l 
  XP_011089912.1 163 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPT-KIAEILKDRPSWFRDCRSLEVFTMFPAGngGTIELL 256
                     7899******************************************************.7777777777***********999999999****** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++++a+++l+p Rdf+++Ry+ +l+ g++v++++S++ +   p+    s++vRae lpSg+li+p+++g+s +++v+h +l++++++++lr+l+
  XP_011089912.1 257 YTQTYAPTTLAPaRDFWTLRYTTTLENGSLVVCERSLSGTGAGPSaaaASQFVRAEILPSGYLIRPCEGGGSIIHIVDHLNLQAWSVPEVLRPLY 351
                     *****************************************99999999********************************************** PP

                     HHHHHHHHHHHHHHTXX CS
           START 186 ksglaegaktwvatlqr 202
                     +s+ + ++k++  +l++
  XP_011089912.1 352 ESSKVVAQKMTIGALRY 368
                     *********99888876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.241983IPR001356Homeobox domain
SMARTSM003894.2E-152187IPR001356Homeobox domain
SuperFamilySSF466892.87E-162285IPR009057Homeodomain-like
CDDcd000864.76E-162484No hitNo description
PfamPF000467.5E-162582IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.9E-182682IPR009057Homeodomain-like
CDDcd146865.91E-676115No hitNo description
PROSITE profilePS5084827.96153381IPR002913START domain
CDDcd088751.02E-66157373No hitNo description
Gene3DG3DSA:3.30.530.208.7E-20162352IPR023393START-like domain
SMARTSM002349.7E-41162372IPR002913START domain
SuperFamilySSF559614.81E-35162374No hitNo description
PfamPF018522.2E-47163369IPR002913START domain
PfamPF086706.5E-50695838IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 839 aa     Download sequence    Send to blast
MAMVAQHHRE NSSGSINKHL DSGKYVRYTA EQVEALERVY AECPKPSSLR RQQLIRECPI  60
LSNIEPKQIK VWFQNRRCRE KQRKESVRLQ SVNRKLTAMN KLLMEENDRL QKQVSQLVCE  120
NGYMRQQLQS ASAPATDASC ESAVTTPQHS LRDANNPAGL LSIAEETLAE FLSKATGTAV  180
DWVQMPGMKP GPDSVGIFAI SQSCSGVAAR ACGLVSLEPT KIAEILKDRP SWFRDCRSLE  240
VFTMFPAGNG GTIELLYTQT YAPTTLAPAR DFWTLRYTTT LENGSLVVCE RSLSGTGAGP  300
SAAAASQFVR AEILPSGYLI RPCEGGGSII HIVDHLNLQA WSVPEVLRPL YESSKVVAQK  360
MTIGALRYIR QIAQETSGEV VYGLGRQPAV LRTFSQRLSR GFNDAINGFN DDGWSLLNCD  420
GAEDVIVAIN SAKNLTTGSS ALSLLGGVLC AKASMLLQNV PPAVLVRFLR EHRSEWADFN  480
VDAYAAVSLK ASTYAYPGMR PMRFTGSQII MPLGHTIEHE EMLEVIRLEG HSLSHEDAFG  540
SRDIHLLQMC SGVDENAVGA CSELVFAPID EMFPDDAPLL PSGFRIIPLD SKPGDSQDVL  600
TSHKTLDLAS SLEVGPATSH SAENASTSYN ARSVLTIAFQ FPFESNLQDN VATMARQYVR  660
SVVSSVQRVA MAITPSGLSP TVEPKLSPGS PEALTLAHWI CQSYSYHLGT ELLRADSTSG  720
ESVLKALWLH QDAILCCSLK ALPVFIFANQ AGLDMLETTL VALQDITIDK IFDDSGRKAL  780
FSEFAKIMEQ GFAYLPGGIC MSTMGRHISY EQAIVWKVFA AEENSVHCLA FAFVNWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011089912.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089912.10.0homeobox-leucine zipper protein REVOLUTA
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLA0A2G9I7310.0A0A2G9I731_9LAMI; Transcription factor HEX
STRINGVIT_06s0004g02800.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]