PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011089852.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family AP2
Protein Properties Length: 490aa    MW: 54117.8 Da    PI: 7.6731
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011089852.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.8e-17159208155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  XP_011089852.1 159 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTALAAARAYDRAAIKFRG 208
                     78*******************......55************************997 PP

2AP241.24e-13251301155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV+ +k  grW+A+   +     +k+ +lg f+t+ eAa+a+++a+ k +g
  XP_011089852.1 251 SKYRGVTLHK-CGRWEARMGQF--L-GKKYMYLGLFDTEVEAARAYDKAAIKCNG 301
                     89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.77E-15159217IPR016177DNA-binding domain
PfamPF008476.0E-9159208IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.5E-17160217IPR001471AP2/ERF domain
SMARTSM003801.9E-31160222IPR001471AP2/ERF domain
PROSITE profilePS5103217.477160216IPR001471AP2/ERF domain
CDDcd000181.68E-11160218No hitNo description
SuperFamilySSF541715.04E-17251310IPR016177DNA-binding domain
CDDcd000184.96E-26251311No hitNo description
PfamPF008471.5E-8251301IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-16252309IPR001471AP2/ERF domain
SMARTSM003805.9E-33252315IPR001471AP2/ERF domain
PROSITE profilePS5103215.923252309IPR001471AP2/ERF domain
PRINTSPR003676.9E-6253264IPR001471AP2/ERF domain
PRINTSPR003676.9E-6291311IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MFDLNLSVDC NGKAMLKTDH SEGQSPETSL SSVVNGTGET SSSNDDTCST RAASPIHGGG  60
DSAAFTFNFD ILANTSNSGN DDPVDKGDSG LTLAESRLVT RELFPVSRLG ELNLGRQITE  120
PANLRFDHGL PTTAVQQQKQ EVQQVQARKS RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC  180
GKQVYLGGFD TALAAARAYD RAAIKFRGVD ADINFNLSDY EEDMKQTKNL TKEEFVHILR  240
RQSTGFSRGS SKYRGVTLHK CGRWEARMGQ FLGKKYMYLG LFDTEVEAAR AYDKAAIKCN  300
GRDAVTNFEP STYDGEMIPK PGNEAGSRDD LDLNLGMSTS SPKESENLGS FQFPPYNVQN  360
SRMLKLHMQN SGNPPLNGPP VALEHPRLLT GVNDKFVPNY EERTSQQRTG LVSGQEVGNW  420
AWQMHDRARA IPNATLSTAA SSGFSSTATN SDSSYQTTAL NLRFLSSYPH ASINASQYYS  480
HHITPSFPHP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011089852.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089852.10.0ethylene-responsive transcription factor RAP2-7 isoform X1
SwissprotQ84TB51e-108AP22_ORYSJ; APETALA2-like protein 2
TrEMBLA0A2G9HGG31e-171A0A2G9HGG3_9LAMI; Uncharacterized protein
STRINGPGSC0003DMT4000653131e-156(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-108related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]