PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011089787.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB_related
Protein Properties Length: 685aa    MW: 76431.1 Da    PI: 8.4702
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011089787.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.65.8e-08586635147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r ++T  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
   XP_011089787.1 586 RRPFTVAEVEALVQAVEKLGTGRWRDVKLRAFenaKHRTYVDLKDKWKTL 635
                      679***********************9888888**************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542364.14E-6388469IPR029071Ubiquitin-related domain
PROSITE profilePS5129416.007581640IPR017930Myb domain
SMARTSM007171.1E-7585638IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-11586636IPR009057Homeodomain-like
SuperFamilySSF466899.79E-16587668IPR009057Homeodomain-like
CDDcd116604.77E-17587637No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MVLEKRLEYG FNGYQVPPTP RAARSVRRRC LFKSKAGNRQ LCAFDLLATV ADKILLDTGR  60
SPPSVDTSSG REQQAIVVSS VEKEEKNEAE PFEEKSFDRD CYERNFLFTE LVSEAPNLKI  120
CSNELTCAQN DAISRPTSGI TTSDCSEKVG SAEQLVDDDC KLRLGISSPS VDVVSSDCGL  180
SAKSESEDES RKQINNASAN NKNLTKRNRN DMHSSGRPEA WDRKPSAFIS SIDSVKFPFC  240
SKHTPSGALP VIRDYKKLAT RDDDENYSAL NDPSTGNKAC RPSRVGDHGT KKTLPSKRFK  300
VTLDLKDDEH YNADIERCNY LNRKNNFKCE RSMRDYPFKK RKFYDCGSGS NCDEGIDSNG  360
ICVVENGTNE GERDSPPTPP RGEHASFPSG NPHVKLKIKS FRVPELFIEI PETATVGCLK  420
RTVMKAVNAV LGGGICVGVL LQGKKIRDDN KTLLQTGISH DNKMDTLGFT LEPRVTEAPI  480
QLCPEDRSRQ LVHNSQLRAR YPPPSITHDA VQQGNGDTTP DLPGINFKNF KESDYDSAPS  540
PSDMSLQKTA TETEALVPIP ATKPDALAVV PLRTLKRSES AQRRIRRPFT VAEVEALVQA  600
VEKLGTGRWR DVKLRAFENA KHRTYVDLKD KWKTLVHTAR IAPQQRRGEP VPQELLDRVL  660
TAHAYWSQQQ PRQHLKSQPD TCLLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A6e-555766767107Telomere binding protein TBP1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011089787.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089786.10.0telomere repeat-binding protein 5
RefseqXP_011089787.10.0telomere repeat-binding protein 5
TrEMBLA0A2G9I6C50.0A0A2G9I6C5_9LAMI; Uncharacterized protein
STRINGVIT_06s0004g04940.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.14e-99TRF-like 2