PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011089486.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB_related
Protein Properties Length: 697aa    MW: 77096.9 Da    PI: 9.083
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011089486.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.65.9e-08598647147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r ++T  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
   XP_011089486.1 598 RRPFTVAEVEALVQAVEKLGTGRWRDVKLRAFdsaKHRTYVDLKDKWKTL 647
                      679***********************9988889**************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542365.31E-7400487IPR029071Ubiquitin-related domain
PROSITE profilePS500539.134404474IPR000626Ubiquitin domain
PROSITE profilePS5129416.007593652IPR017930Myb domain
SMARTSM007178.9E-8597650IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-10598648IPR009057Homeodomain-like
SuperFamilySSF466897.52E-16599680IPR009057Homeodomain-like
CDDcd116601.10E-17599649No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    Send to blast
MALQKRLDYG FNGYQVPPTP RAARSVRRRC VFKRKADDQQ MCAFDLLATV AGKLLLDGES  60
PASAHASCRK EQPAALEDSV GKEEKDENKP LEEKSCDQNC YERNFLFTEL VSEAPKPNFR  120
PDELVCTQND VISRPASGIT TSDCSEKVGP AEQLVNDDCK LRLGIFTPSV DVESSGFRVP  180
ANCGSEDESR KPIKMDSAST RNFSISNKAS LCSSGHSEAW DRKPSVLVSP VDSLKFPFCR  240
DNTPCGSFPG NQDNVKLVNR DDDENSSECN EPGTRNKAFK PQPRVGDRRF RKLLASKHCK  300
ITPNVKDDER YNADTERCDY LNRKNNIKRQ RSMRDYPFKK RKLYDCSSVS NSEEGVSSDG  360
ICTVPANGTN GGGLGPGPTL PGAIPNPTPA AGGNASFHTR NSQVKLKIKS FRVPELYIEI  420
PENATVGSLK RTVLEAVNAV LGGGLRVGVL LQGKKIRDDN KTLLQTGISQ DNKMDTLGFT  480
LEPSPTPAPI RLYPEDRRGQ LLCDSPQPLA RYPPTPSITQ NGGQQRNLDT PPDLPGTSFN  540
NFIESDHDSA PSPPGMSLQR TTSESKALVP VPSTKQDALA VVPLRKSKRS ESAQRRIRRP  600
FTVAEVEALV QAVEKLGTGR WRDVKLRAFD SAKHRTYVDL KDKWKTLVHT ARISPQQRRG  660
EPVPQELLDR VLTAHAYWSQ QQAKQQLKSQ PDTSLLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A3e-555856884107Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1286292DRRFRKL
2327342KRQRSMRDYPFKKRKL
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011089486.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089486.10.0telomere repeat-binding protein 2
RefseqXP_011089488.10.0telomere repeat-binding protein 2
SwissprotQ6R0E31e-140TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A2G9I6C50.0A0A2G9I6C5_9LAMI; Uncharacterized protein
STRINGVIT_06s0004g04940.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30762348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-111TRF-like 2