PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011089376.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family AP2
Protein Properties Length: 466aa    MW: 51149.9 Da    PI: 8.4614
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011089376.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.6e-17148197155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  XP_011089376.1 148 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTALAAARAYDRAAIKFRG 197
                     78*******************......55************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.5E-15148207IPR016177DNA-binding domain
PfamPF008475.6E-9148197IPR001471AP2/ERF domain
CDDcd000185.68E-12149207No hitNo description
Gene3DG3DSA:3.30.730.108.6E-17149205IPR001471AP2/ERF domain
PROSITE profilePS5103217.477149205IPR001471AP2/ERF domain
SMARTSM003802.0E-31149211IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-6240284IPR016177DNA-binding domain
CDDcd000189.73E-13240285No hitNo description
SMARTSM003806.9E-12241289IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MFDLNLTVDC IGEPNTLEGQ SPATSLSSVV NGEAENVSSS NDDASSPRAS AFTFNFDILN  60
STRTDDPVLG NHDPDDLGLT STHSGLVTRE LFPVSRLGEL IRGRRQNETA DPPVDQGLRQ  120
HSIPGMAVQQ QQQVQARKSR RGPRSRSSQY RGVTFYRRTG RWESHIWDCG KQVYLGGFDT  180
ALAAARAYDR AAIKFRGVDA DINFNISDYE EDMKQIMNLS KEEFVQLLRR QSTGFSRGTS  240
KYRGVTLHKC GRWEARMGQL LGKKAYDKAA IKCNGSEAFT NFNPSTYNVE TRSKPCKGGS  300
QHDLDLNLGI STSPPEESGR LGSLVFNTHD VQHTRTSKLH AESSATTIVG NRPLNGLPVT  360
SEHPMLWTGL NPKFVPIYEE TSSAERTASI SPQEAANWAW KMHGQARVTP NATTLCAAAS  420
SGFSSLAKTV PFDSASLIPL RVSSYPSTSP NTCPNYSQMK LYSPPS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011089376.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089376.10.0ethylene-responsive transcription factor RAP2-7-like isoform X2
SwissprotQ9SK033e-95RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A2G9FZN31e-161A0A2G9FZN3_9LAMI; Uncharacterized protein
STRINGXP_009623868.11e-130(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.12e-91related to AP2.7