PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011088828.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family FAR1
Protein Properties Length: 786aa    MW: 89805.2 Da    PI: 6.8157
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011088828.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR11002.4e-3179170291
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                     fYn+YA++vGFs+r+s+s++s+++g i++r fvC keg+r+ ++k+  +++ +r+r++tr+gCka+l vk +++gkw+v+ +++eHnHel+p
  XP_011088828.1  79 FYNSYARRVGFSTRVSSSRRSRKDGAIIQRSFVCAKEGFRNLNEKRtkDREIKRPRTVTRVGCKASLSVKIQDSGKWVVSGFVKEHNHELVP 170
                     9***************************************998888545677889***********************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-2979170IPR004330FAR1 DNA binding domain
PfamPF105512.4E-31291383IPR018289MULE transposase domain
PfamPF044347.2E-12559605IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.263571607IPR007527Zinc finger, SWIM-type
SMARTSM005751.2E-9582609IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 786 aa     Download sequence    Send to blast
MENGVIEFDI GLGGGDDAID IEPPNDDGEM PDGSPNDANS LGSGSGDTAF AQSYIPEGDL  60
DLEPYEGMEF ESEEAAKAFY NSYARRVGFS TRVSSSRRSR KDGAIIQRSF VCAKEGFRNL  120
NEKRTKDREI KRPRTVTRVG CKASLSVKIQ DSGKWVVSGF VKEHNHELVP PDQVHCLRSH  180
RQISGPAKTL IDTLQAAGMG PRRIMSVLIK EYGGISKVGF TEVDCRNYMR NNRQRSMEGD  240
IQLLLDYLKQ KQAENPSFFY AVQGDEDQYT GNVFWADPKA RTDYSYFGDT VTFDTTYRSN  300
RYRLPFVPFT GLNHHGQPVL FGCAFLINES EASFVWLFKT WLAAMSGRSP VSITTEHDTV  360
IRSAIMQVFP NTRHRFCKWH IFKQCQEKLS HVLLKHPHFE AALHKCVNLS ESTEEFESCW  420
HSLAEKYDLR DHKWLQAIYV DRRQWVPVYL HDTFFAEMSI TQRSDSMNSY FDGYVNASTN  480
LNQFFKLYEK ALESRHEKEV KADFDTMNTS AVLKTPSPME KQASDFYTRK IFMRFQEELV  540
STLTFMASKV EDDGEVTTYR VAKFGEDHKA YHVRFNVLEM RATCSCQMFE FSGLLCRHVL  600
AVFRVTNVLT LPSHYILKRW TRNAKSSVVL EERVTDPFNS YLESHTVRYN TLRHEAFKFV  660
DEGAESVESY TIAMSALTEA SKKVAVAIKN EGKPSISNGP MRDVSARGRI WPNHCAGEGQ  720
GSSAQQLSED DMDQKINELS TDLERANRKC EVYRTNLLSL LKDIEDHKQR LSIEVQNIKL  780
SMKDGL
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011088828.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020552571.10.0protein FAR1-RELATED SEQUENCE 5
RefseqXP_020552572.10.0protein FAR1-RELATED SEQUENCE 5
RefseqXP_020552573.10.0protein FAR1-RELATED SEQUENCE 5
SwissprotQ9SZL80.0FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A2G9G6P20.0A0A2G9G6P2_9LAMI; Uncharacterized protein
STRINGEMJ021540.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.10.0FAR1-related sequence 5
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]