PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011088407.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB_related
Protein Properties Length: 89aa    MW: 10352.7 Da    PI: 9.6911
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011088407.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.12.6e-10752345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT++E +l+ +a +++  +   +W  +ar +g g++ +++k ++q
   XP_011088407.1  7 SWTPQENKLFEKALARFDRDtpdRWQNVARAVGGGKSVEDVKTHYQ 52
                     6*****************99*************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.7359IPR017884SANT domain
SMARTSM007174.1E-8457IPR001005SANT/Myb domain
SuperFamilySSF466896.82E-13663IPR009057Homeodomain-like
PfamPF002493.7E-8752IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-4754IPR009057Homeodomain-like
CDDcd001677.81E-6752No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MASSSHSWTP QENKLFEKAL ARFDRDTPDR WQNVARAVGG GKSVEDVKTH YQILIEDLRR  60
IESGHVPIPN YTNTNSIHEE KRLMKFLKM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-27183187RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011088407.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088407.12e-62protein RADIALIS-like 4
SwissprotQ1A1731e-29RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2G9H3U09e-49A0A2G9H3U0_9LAMI; Uncharacterized protein
STRINGMigut.B00229.1.p7e-42(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.25e-32RAD-like 6