PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011088263.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ERF
Protein Properties Length: 278aa    MW: 30686 Da    PI: 6.773
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011088263.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643.1e-20129178255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae+Aa+a+++a+ +++g
  XP_011088263.1 129 NYRGVRQRP-WGKWAAEIRDPR----KaARVWLGTFETAEDAARAYDRAAIEFRG 178
                     59*******.**********94....36************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.62E-24128186No hitNo description
SMARTSM003802.0E-39129192IPR001471AP2/ERF domain
PROSITE profilePS5103225.409129186IPR001471AP2/ERF domain
PfamPF008474.9E-14129178IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-33129186IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-23129188IPR016177DNA-binding domain
PRINTSPR003674.5E-12130141IPR001471AP2/ERF domain
PRINTSPR003674.5E-12152168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MQRSNKRIKQ EDSNHSTTNS SSMTAALPSP PPRLTSEQEA SVMVAALKNV ITGASCSENA  60
AQDFQFSSHF GRGGASGDGF FPVSGDMETC RFCGIKGCLG CNFFDEEKKS SDKNVSESAA  120
EGKKRKKKNY RGVRQRPWGK WAAEIRDPRK AARVWLGTFE TAEDAARAYD RAAIEFRGPR  180
AKLNFPFSDY TYSSPSAAVT TVASSSFQPQ ENVIELQKKK HQENEDMLKL GTTSIDKNQK  240
DIWDLTIGED EIEQWMMTMD FNNGDSSDSA NGGNVLSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-26128187161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122126KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00469DAPTransfer from AT4G34410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011088263.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088263.10.0ethylene-responsive transcription factor ERF109
SwissprotQ9SZ064e-38EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLA0A2G9GYP81e-110A0A2G9GYP8_9LAMI; Uncharacterized protein
STRINGMigut.B00347.1.p4e-94(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.14e-35redox responsive transcription factor 1
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]