PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011088147.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 356aa    MW: 39425.9 Da    PI: 8.3207
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011088147.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.88.4e-13174221355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     + h  +Er+RR+++ ++f  L +l+P +     kK++Ka++L  A++Y+k+Lq
  XP_011088147.1 174 QDHILAERKRREKLSQRFIALSTLVPGL-----KKMDKASVLGDAIKYMKQLQ 221
                     56999***********************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.126171220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.1E-11174221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-18175233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-17175237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.99E-13176225No hitNo description
SMARTSM003533.2E-15177226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MEISSFRTLA DLGMEDPLFF QQWSVDPLDE LSSVSIASAF GGDFHHSYTS QQAPAAQLGF  60
KRAPEPSPAG ENKPLKQLKT TTVAWNNSCK PENISSSPPP SSTVNLGFNN ISTITNSVVG  120
MVKPKEETWS SSSTITFPSE SIVSQASFGN QNYVLKPCQG AKRISTTTRL AQAQDHILAE  180
RKRREKLSQR FIALSTLVPG LKKMDKASVL GDAIKYMKQL QDKVKSLEEQ TKKRTMESVV  240
FVKKYEVHNS GDHAENSSSD ESFSNGPVIT EQLPEIEARF CNKDVLISIH CEKRKGVLEK  300
TVAEIEKLHL SVVNSSVMSF GESALNITVI AQKDEDFTMN MKELVKNLRA TLKVFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-14175224857Transcription factor MYC2
5gnj_B7e-14175224857Transcription factor MYC2
5gnj_E7e-14175224857Transcription factor MYC2
5gnj_F7e-14175224857Transcription factor MYC2
5gnj_G7e-14175224857Transcription factor MYC2
5gnj_I7e-14175224857Transcription factor MYC2
5gnj_M7e-14175224857Transcription factor MYC2
5gnj_N7e-14175224857Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179184ERKRRE
2180185RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011088147.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088147.10.0transcription factor bHLH18-like
SwissprotQ9T0724e-62BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A2G9GHL61e-152A0A2G9GHL6_9LAMI; Uncharacterized protein
STRINGPGSC0003DMT4000130741e-125(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17602461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-64bHLH family protein