PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011087359.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family TCP
Protein Properties Length: 368aa    MW: 41721.7 Da    PI: 9.0645
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011087359.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP93.15.6e-2950149389
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg......... 88 
                     g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WLl + k +i++l+ ++ ++ s++  ++   + + ss +         
  XP_011087359.1  50 GGKDRHSKVCTLRGLRDRRIRLSVPTAIQLYDLQDKLGLSQPSKVVDWLLDATKDEIDKLPPLPMIPGSFTPFHQPTLACQDSSGTinpqnpmsh 144
                     78*************************************************************88888777333333333322222223211222 PP

             TCP  89 ....k 89 
                         +
  XP_011087359.1 145 flatN 149
                     33321 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.89851109IPR017887Transcription factor TCP subgroup
PfamPF036342.1E-2651123IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MMAMNPREKD FQAKRDGDPN YNKFPKFTSS SRQWSSYKNP RIIRVSRDFG GKDRHSKVCT  60
LRGLRDRRIR LSVPTAIQLY DLQDKLGLSQ PSKVVDWLLD ATKDEIDKLP PLPMIPGSFT  120
PFHQPTLACQ DSSGTINPQN PMSHFLATNH PFAKNLGIST PRKDGIIKID EDEKEMSTTG  180
KEKWIFPQQE QENQEGFGGF VAQLSAQNLF PLSNINHQSS SIPNLGYNSY FHCWDPPNLS  240
LSQFGGGFTF PNQTDEQQQQ QPYNTLSTFN LPTSSQLYFC PSATALPASI IPSFPSYIST  300
PSLDNYGLRQ FNHHHQLQQN PQLLPTTTLH LINPTMKSFA LNVNSKTVNH SQDQKAADER  360
RNKDHRNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-1756110155Putative transcription factor PCF6
5zkt_B2e-1756110155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011087359.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0427274e-58KJ042727.1 Sesamum indicum clone TilSSR_13928 microsatellite Sesame_13928 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087359.10.0transcription factor TCP5
TrEMBLA0A061G4Y74e-90A0A061G4Y7_THECC; Teosinte branched 1, putative
STRINGEOY220947e-91(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.15e-49TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5