PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011087051.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family HD-ZIP
Protein Properties Length: 364aa    MW: 40149.5 Da    PI: 4.7365
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011087051.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox491.1e-15206261256
                     T--SS--HHHHHHHHHHHHHSSS--HH.HHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsae.ereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++keq   Lee F+++++++ + ++  LAk+l+L  rqV vWFqNrRa+ k
  XP_011087051.1 206 RKKLRLSKEQSAFLEESFKEHSTLNPQkQKLALAKQLNLRPRQVEVWFQNRRARTK 261
                     778899******************97626779**********************98 PP

2HD-ZIP_I/II120.96.4e-39206297192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLep.erKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     +kk+rlskeq+++LEesF+e+++L+p ++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
  XP_011087051.1 206 RKKLRLSKEQSAFLEESFKEHSTLNPqKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLSEENRRLHKELQELR-ALK 297
                     69***********************94579**********************************************************9.555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-15191261IPR009057Homeodomain-like
SuperFamilySSF466896.84E-16196264IPR009057Homeodomain-like
PROSITE profilePS5007116.05202263IPR001356Homeobox domain
SMARTSM003899.7E-12204267IPR001356Homeobox domain
PfamPF000463.6E-13206261IPR001356Homeobox domain
CDDcd000861.24E-14206264No hitNo description
PROSITE patternPS000270238261IPR017970Homeobox, conserved site
SMARTSM003405.8E-25263306IPR003106Leucine zipper, homeobox-associated
PfamPF021831.0E-10263297IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MELGLSLGDG VGFLREDNNT EKSTKQKIKS TGLDFCMGLG LNSSAAAGGD DQEREKPQKI  60
TNEDDDDDDD DDDDDQMSEG DNQGSDDDNT PVQLNLLPLA PVPRRALPNW STSDNGSPEN  120
GSSGNMGLPV AARGLDVNRF PPAEEVSSAN SVGTTSPFHM EFGLLRRGTG YLQLGGQKRA  180
FEAATGNDVV ESERGSDDDE NGLQTRKKLR LSKEQSAFLE ESFKEHSTLN PQKQKLALAK  240
QLNLRPRQVE VWFQNRRART KLKQTEVDCE YLKRCCETLS EENRRLHKEL QELRALKTSN  300
PFYMQLPATT LTMCPSCERV ATAPPPTAAA ESIPKPIPAF PLTRPRFYPF SQTPTGHPNQ  360
PAPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204210TRKKLRL
2255263RRARTKLKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087051.10.0PREDICTED: homeobox-leucine zipper protein HOX11-like isoform X1
TrEMBLA0A0V0I3B81e-116A0A0V0I3B8_SOLCH; Putative homeobox-leucine zipper protein HOX27-like
STRINGPGSC0003DMT4000161461e-115(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.17e-69homeobox from Arabidopsis thaliana