PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011086174.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family HD-ZIP
Protein Properties Length: 726aa    MW: 79674.2 Da    PI: 5.8689
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011086174.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.72.3e-1959114156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++  ++t++q++e+e++F+++++p+ ++r+eL ++lgL+  qVk+WFqN+R+++k
  XP_011086174.1  59 KKRYNRHTQHQIQEMESFFKECPHPDDKQRKELGRRLGLEPLQVKFWFQNKRTQMK 114
                     577789***********************************************998 PP

2START2239.6e-702474671206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela +a++el+++a+++ep+W  s     e + ++e++++f+++ +      ++ea+r+s+vv+m++ +lve+l+d++ qW+  +     +a+tl
  XP_011086174.1 247 ELAVAAMEELIRMAQSGEPLWIPSTdnsaETLSEEEYVRTFPRGIGpkplgMKSEASRESAVVIMNHINLVEILMDVN-QWSSVFSsivsRAMTL 340
                     57899******************999999999***********999********************************.**************** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     ev+s+g      galq+m+ae+q++splvp R+ +fvRy++q+g+g+w++vdvS+d+ ++ +    + R++++pSg+li++++ng+skvtwvehv
  XP_011086174.1 341 EVLSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHGDGTWAVVDVSLDNLRPSS----ISRCRRRPSGCLIQELPNGYSKVTWVEHV 431
                     ***********************************************************965....8**************************** PP

                     E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     ++++r +h+++++lv+sgla+ga++wvatl+rqce+
  XP_011086174.1 432 EVDDRAVHSIYKPLVNSGLAFGARRWVATLDRQCER 467
                     **********************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-2240114IPR009057Homeodomain-like
SuperFamilySSF466891.0E-1841116IPR009057Homeodomain-like
PROSITE profilePS5007116.66556116IPR001356Homeobox domain
SMARTSM003895.5E-1857120IPR001356Homeobox domain
CDDcd000865.57E-1858117No hitNo description
PfamPF000464.6E-1759114IPR001356Homeobox domain
SuperFamilySSF559614.58E-40238469No hitNo description
PROSITE profilePS5084847.489238470IPR002913START domain
CDDcd088758.62E-133242466No hitNo description
SMARTSM002343.3E-68247467IPR002913START domain
PfamPF018523.5E-58248467IPR002913START domain
Gene3DG3DSA:3.30.530.205.4E-6344466IPR023393START-like domain
SuperFamilySSF559613.57E-27487718No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048825Biological Processcotyledon development
GO:0090627Biological Processplant epidermal cell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MFQPNIFESH HHLLDMAHKT PENEMDLIRD DEYESKSGTD IMEAPSGDDQ DPNQRPNKKK  60
RYNRHTQHQI QEMESFFKEC PHPDDKQRKE LGRRLGLEPL QVKFWFQNKR TQMKAQHERH  120
ENTQLRNENE KLRAENIRYK EALSNATCPN CGGPAAIGEM SFDEQHLRIE NARLREEIDR  180
ISGIAAKYVG KPMLSYPHLP PGASRSLDLG VGNFAPQAGM TGEIYGAADL LRSVSGPTDA  240
DKPMIIELAV AAMEELIRMA QSGEPLWIPS TDNSAETLSE EEYVRTFPRG IGPKPLGMKS  300
EASRESAVVI MNHINLVEIL MDVNQWSSVF SSIVSRAMTL EVLSTGVAGN YNGALQVMTA  360
EFQVPSPLVP TRENYFVRYC KQHGDGTWAV VDVSLDNLRP SSISRCRRRP SGCLIQELPN  420
GYSKVTWVEH VEVDDRAVHS IYKPLVNSGL AFGARRWVAT LDRQCERLAS VLANNISAGD  480
VGVISSPEGR KSMLKLAERM VMSFCTGVGA STAHTWTTLS GSGADDVRVM TRKSMDDPGR  540
PPGIVLSAAT SFWLPVPPKR VFDFLRDENS RSEWDILSNG GLVQEMAHIA NGRDPGNSVS  600
LLRVNSANSS QSNMLILQES CTDSTGSYVI YAPVDIVAMN VVLSGGDPDY VALLPSGFAI  660
LPDGPNNQSG GIPEVGSGGS LLTVAFQILV DSVPTAKLSL GSVATVNSLI KCTVERIKGA  720
VLCDGA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011086174.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096101.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_011096102.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_011096103.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_020554106.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_020554107.10.0homeobox-leucine zipper protein MERISTEM L1
SwissprotQ8RWU40.0ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1
TrEMBLA0A2G9GCJ20.0A0A2G9GCJ2_9LAMI; Uncharacterized protein
STRINGMigut.M01293.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9322491
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Takada S,Takada N,Yoshida A
    Induction of epidermal cell fate in Arabidopsis shoots.
    Plant Signal Behav, 2013. 8(11): p. e26236
    [PMID:23989220]
  3. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  4. Katagiri Y, et al.
    The coordination of ploidy and cell size differs between cell layers in leaves.
    Development, 2016. 143(7): p. 1120-5
    [PMID:26903507]
  5. Seeliger I, et al.
    The AP2-type transcription factors DORNRĂ–SCHEN and DORNRĂ–SCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  6. Schwarz EM,Roeder AH
    Transcriptomic Effects of the Cell Cycle Regulator LGO in Arabidopsis Sepals.
    Front Plant Sci, 2016. 7: p. 1744
    [PMID:27920789]
  7. Meyer HM, et al.
    Fluctuations of the transcription factor ATML1 generate the pattern of giant cells in the Arabidopsis sepal.
    Elife, 2018.
    [PMID:28145865]