PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011085755.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ZF-HD
Protein Properties Length: 345aa    MW: 37607.6 Da    PI: 7.8216
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011085755.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer110.59e-3547104359
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                      v+YkeClkNhAa+lGgha+DGCgEfmps++++ +++++lkCaACgCHRnFHRre++e
  XP_011085755.1  47 VVTYKECLKNHAATLGGHALDGCGEFMPSPTSNpADPTSLKCAACGCHRNFHRREPDE 104
                     589******************************9*********************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047707.1E-2948102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.9E-3149101IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257746.0E-2350100IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.41850101IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466894.1E-19195262IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-30197263IPR009057Homeodomain-like
TIGRFAMsTIGR015652.2E-26201258IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MDLTNSTVKT PDAETETPTR IQPAKASPFT NGVLKRHPPL HLHHPVVVTY KECLKNHAAT  60
LGGHALDGCG EFMPSPTSNP ADPTSLKCAA CGCHRNFHRR EPDESLLPAP PNATPALEYR  120
PHHRHHPPPP PPPPPPPRGN SGSSPNNSPS PPPISSSYYP SAPHMLLALS HGLSGRPPDS  180
GTPISGGINA SSVPLLNSNS RKRFRTKFTQ DQKEKMFEFA ERVGWKMQKR DEDVISEFCS  240
EIGVDKGVFK VWMHNNKNTF GKKDQHQPQL SNTTTTAPPA ATTNGSGINF GSASEEGHYH  300
HHQQHEENYD SKENVHGQEL SHHHQLHDNS STAHILGTNG SSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-222002591675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011085755.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085755.10.0zinc-finger homeodomain protein 9
SwissprotQ9LXG02e-77ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A2G9HG831e-148A0A2G9HG83_9LAMI; Uncharacterized protein
STRINGXP_009620291.11e-105(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.13e-35homeobox protein 34
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]