PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011085506.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family LBD
Protein Properties Length: 584aa    MW: 66842.2 Da    PI: 4.6198
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011085506.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260120.49.8e-3841041100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +CaaCk lrrkC++dCv+a+yfpa++p+kf  vhk++Ga nv kllk+l  +++r++a++slvyeAe r+rdPv+G+vg++  lqq+l+q++++l
  XP_011085506.1   4 PCAACKCLRRKCTNDCVFARYFPADNPSKFTSVHKVYGACNVAKLLKELgTDSQRNEAVKSLVYEAEYRLRDPVHGCVGHVALLQQKLRQVQHDL 98 
                     7************************************************77778***************************************** PP

          DUF260  95 allkee 100
                     + +k+e
  XP_011085506.1  99 ECAKKE 104
                     *99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.6423105IPR004883Lateral organ boundaries, LOB
PfamPF031957.2E-374102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MLPPCAACKC LRRKCTNDCV FARYFPADNP SKFTSVHKVY GACNVAKLLK ELGTDSQRNE  60
AVKSLVYEAE YRLRDPVHGC VGHVALLQQK LRQVQHDLEC AKKELSTYIA PSEMLPQQQP  120
QQNFLPSVYQ MMPSHVQQMM IPTGVPLPHR GQLVIREPNL QEQQHQQKQI LEAQQLVAMA  180
AAMEQETLRS YQQQQLQQLQ EQEVLRAYEQ QLLQQLQEQE VLRADEQQQL QHQQQLQQQQ  240
GHDLVRFNNV FDDGAGPSTA TGFNEMPEEA AAMEQEMLRA YEQQQLQQLQ EQEVLRADEQ  300
QQLQQLQEQE VLRADEQQQL QYQQQLQHQQ QLQQQQGHDL VRFNNVFDDG AGPSTATGFN  360
EMPEKAAAME QEMLRAYEQQ QLQHLQQQQE QELLRAYAQQ LQQQTEHDLV RFSTNVFDDG  420
AGPSTATGFN EMPEEAAAME QEMLRAYEQQ LQQQAAHDLV RLSSNVFDDG AGPSTATGFN  480
EMPEEAAAKA DGMQPFMSLG GSYETNPYHH IQHHNLVQEQ SFSPSHPHTD HPNQLQLVAT  540
EELFLQQQEQ QRRDVTSHNH LQQTEQQLAS STPGLAVPPA IPER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-32410811114LOB family transfactor Ramosa2.1
5ly0_B2e-32410811114LOB family transfactor Ramosa2.1
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011085506.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020551532.10.0putative mediator of RNA polymerase II transcription subunit 26
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.13e-47ASYMMETRIC LEAVES 2-like 1