PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011085207.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family HD-ZIP
Protein Properties Length: 847aa    MW: 93117.6 Da    PI: 6.5904
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011085207.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.31.2e-182078357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_011085207.1 20 KYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 78
                    6789*****************************************************97 PP

2START169.42.3e-531683752204
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e++ ka+ ++ +Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++  ++   i +g  g+++l+
  XP_011085207.1 168 IAEETLAEFLGKATGTAVNWVQMIGMKPGPDSIGIIAVSRNSSGVAARACGLVSLEPM-KVAEILKDRPSWYRDCRCLDVASIIPTGngGTIELI 261
                     68999***********************************9*****************.8888888888*****************999****** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++++a+++l++ Rdf+++Ry+ +l++g++vi+++S++s +  p+    + +vRae+lpSg+li+p+++g+s +++v+h+dl++++++++lr+l+
  XP_011085207.1 262 YMQTYAPTTLAAaRDFWTLRYTTSLEDGSLVICERSLTSSTGGPNgppAACFVRAEMLPSGYLIRPCEGGGSIIHIVDHIDLDAWSVPEVLRPLY 356
                     *****************************************9999999999******************************************** PP

                     HHHHHHHHHHHHHHTXXXX CS
           START 186 ksglaegaktwvatlqrqc 204
                     +s+ + ++k+++a+l++ +
  XP_011085207.1 357 ESSKILAQKMTMAALRHIR 375
                     ***************9865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.6131579IPR001356Homeobox domain
SMARTSM003891.2E-151783IPR001356Homeobox domain
SuperFamilySSF466892.31E-162082IPR009057Homeodomain-like
CDDcd000861.14E-162080No hitNo description
PfamPF000463.2E-162078IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-182278IPR009057Homeodomain-like
CDDcd146863.92E-672111No hitNo description
PROSITE profilePS5084825.951158386IPR002913START domain
CDDcd088756.22E-70162378No hitNo description
Gene3DG3DSA:3.30.530.206.1E-21166372IPR023393START-like domain
SMARTSM002341.5E-50167377IPR002913START domain
SuperFamilySSF559612.47E-36168379No hitNo description
PfamPF018527.8E-51168375IPR002913START domain
SuperFamilySSF559611.92E-5415495No hitNo description
SuperFamilySSF559611.92E-5528602No hitNo description
PfamPF086701.2E-49702846IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 847 aa     Download sequence    Send to blast
MALCMHRESN SKQQQMDASK YVRYTPEQVE ALERVYAECP KPSSLRRQQL IRECPILSNI  60
EPKQIKVWFQ NRRCREKQRK EASRLQTVNR KLSAMNKLLM EENDRLQKQV SHLVYDNGCM  120
RQQLHTVSTT TTDTSCESVV VSGQKQQLNP TLQRPQRDAN SPAGLLAIAE ETLAEFLGKA  180
TGTAVNWVQM IGMKPGPDSI GIIAVSRNSS GVAARACGLV SLEPMKVAEI LKDRPSWYRD  240
CRCLDVASII PTGNGGTIEL IYMQTYAPTT LAAARDFWTL RYTTSLEDGS LVICERSLTS  300
STGGPNGPPA ACFVRAEMLP SGYLIRPCEG GGSIIHIVDH IDLDAWSVPE VLRPLYESSK  360
ILAQKMTMAA LRHIRQIAQE TNGEIQCTGG REPAVLRTLS QRLCRGFNDA VNGFTDDGWS  420
IMGSDGGEDV TIAINLSPSK FLGSQFNTLC MLPTFGGVLC ARASMLLQNV PPALLVRFLR  480
EHRSEWADYG VDVYSAASLK ASPYAVPCAK PGAIPSSHVT LPLAQTVEHE EFLEVVRLEG  540
HAFSPEDIAL SRDMYLLQLC SGVDETNTGA CAQLVFAPID ESFGDDAHML PSGFRVIPLD  600
PKSDEPAATR TLDLASALEV RHSGGRPPGE VDTSNQNLRS VLTIAFQFTF ENHYQDSVAA  660
MARQYVRSIV ASVQRVAMAI APSRLSSHMV PKPLPGSPEA VTLARWICRS YRAHTGGELL  720
RADSQGGDAV LKQLWHHADA IMCCSIKTNA SAVFTFANQA GLDMMETTLV ALQDIMLEKI  780
LDEAGRKILL SEFSKIMQQG FAYLPAGVCV SSMGRPVSYE QAVAWKVLND EDSNHCLAFM  840
FMNWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011085207.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085207.10.0homeobox-leucine zipper protein ATHB-14
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A4D9B1U80.0A0A4D9B1U8_SALSN; Homeobox-leucine zipper protein
STRINGXP_009612341.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]