PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011084952.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB_related
Protein Properties Length: 533aa    MW: 56868.8 Da    PI: 8.5775
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011084952.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.31.7e-08205231329
                      SS-HHHHHHHHHHHHHTTTT-HHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIar 29 
                       W+te+d +l  av+++G ++W+ Iar
   XP_011084952.1 205 GWSTEDDVKLTAAVQKYGERNWADIAR 231
                      6*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.865198255IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.5E-11199254IPR009057Homeodomain-like
SuperFamilySSF466892.09E-11199253IPR009057Homeodomain-like
SMARTSM007175.8E-8202253IPR001005SANT/Myb domain
PfamPF002499.4E-6205231IPR001005SANT/Myb domain
CDDcd116606.18E-9206252No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MVEKSKIRKK GSIGEEDISA LLQRYSVKTV LTLLQEVANV AGEKIDWGAV VKNTATEISS  60
ARECQMLWRH LAYGQTLIDQ FDNAPDPMDD DSDLEYELEA FPAITRETSV EAAACVKVLI  120
ASDYPIDSHL PNNLTIEAPL TINVPRFKTL TAASDCTLAN VIQGTNISIP VSVQKQPLSS  180
GSSGEKRPNN GTSGVNLPPR RKRRGWSTED DVKLTAAVQK YGERNWADIA RGDFENDRKA  240
SELSQRWANL RKKQGNLNVV TGSQLSEAQL AAAHRAMSLA LDMPMGDNLK AARQMNSVGT  300
KSQPQSQKAS ASPPDQQLGM AGPSKSQVPN KRPSMNPTTG LDSMIKAAAV AAGARIATAT  360
DASSIIEAAR SQNVVHIITG GSSVMKSSTT STSNQLPSNV HFIRNGLTKS PISTYCATPS  420
SRPSEAQQAQ GISIRPAEPA VQSNPVGSAR VLNASSTPSI GVTKTAEVAV VSTSSSEMKE  480
LVQRDQNAGL ANVYDSVQAD QMSENQSAPL GSQSKEKVDI HQTSTSGFQI KVS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011084952.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084950.10.0uncharacterized protein LOC105167083
RefseqXP_011084951.10.0uncharacterized protein LOC105167083
TrEMBLA0A2G9HEQ90.0A0A2G9HEQ9_9LAMI; Uncharacterized protein
STRINGMigut.F01437.1.p0.0(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.14e-60MYB_related family protein