PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011084330.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family HD-ZIP
Protein Properties Length: 831aa    MW: 91822.6 Da    PI: 6.3994
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011084330.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox47.82.5e-152985557
                    SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     ++t+eq+e+Le++++++++p++ +r+++ ++     g++ +q kvWFqNrR +ek+
  XP_011084330.1 29 ARYTEEQIEVLEKVYAECSNPNHYRRAQIMREQpilrGINNKQLKVWFQNRRCREKQ 85
                    579*****************************999********************97 PP

2START115.86.4e-371673712201
                     HHHHHHHHHHHHHHHC-TT-EEEE.EXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEE..ECTTEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkss.esengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlev..issggalql 93 
                     laee+ +e+++ka  ++ +W  ++  ++ ++e++ ++  s ++ g a+ra++  ++++ +  e+l ++   W++ ++ ++++++  +++gg+++l
  XP_011084330.1 167 LAEETKKEFLSKAIGTAVNWIPVPgLKLRNPESTGTIYVSATCIGVAARACVTIPGEPIKIIEILKNRL-SWSRSCRNMDVVAKypVENGGTIEL 260
                     78999*******************967777777777766666*****************8888888888.*************9556788***** PP

                     EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHH CS
           START  94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrsl 184
                     ++++++a++ +++ Rdf+++Ry+  l +g++v++++S++  +  p+     ++vR+++l+Sg+li+p+++g s++  ++h dl+++++++++r+l
  XP_011084330.1 261 IYTQYYAPTIMACaRDFWTLRYTSILDDGSFVVCEQSISGSDGAPSspvALEFVRGRMLVSGYLIRPCEGG-STIDLLDHLDLEASSVPEVVRPL 354
                     ***************************************9998887778899******************9.*********************** PP

                     HHHHHHHHHHHHHHHTX CS
           START 185 vksglaegaktwvatlq 201
                     ++s+  ++ ++ v++l+
  XP_011084330.1 355 YESSELMAKQMIVSALH 371
                     ******99999998886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-141888IPR009057Homeodomain-like
SuperFamilySSF466893.84E-132087IPR009057Homeodomain-like
PROSITE profilePS5007114.1712286IPR001356Homeobox domain
SMARTSM003891.6E-102390IPR001356Homeobox domain
PfamPF000465.3E-132985IPR001356Homeobox domain
CDDcd000863.03E-123087No hitNo description
CDDcd146865.01E-579118No hitNo description
PROSITE profilePS5084820.266157358IPR002913START domain
SMARTSM002344.3E-24166376IPR002913START domain
SuperFamilySSF559611.14E-24167357No hitNo description
PfamPF018524.5E-34167371IPR002913START domain
Gene3DG3DSA:3.30.530.201.4E-18203351IPR023393START-like domain
PfamPF086708.5E-31688830IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 831 aa     Download sequence    Send to blast
MARTELAIGE GSQGGRGGRR GRPEGGRYAR YTEEQIEVLE KVYAECSNPN HYRRAQIMRE  60
QPILRGINNK QLKVWFQNRR CREKQKKENG NLALENRRLA TANKMLRQEN DGLQKKLAQV  120
LCENDHLRNQ VITLTSTITT YNLGRQPEAN DPQLPIRIGD NNSLLSLAEE TKKEFLSKAI  180
GTAVNWIPVP GLKLRNPEST GTIYVSATCI GVAARACVTI PGEPIKIIEI LKNRLSWSRS  240
CRNMDVVAKY PVENGGTIEL IYTQYYAPTI MACARDFWTL RYTSILDDGS FVVCEQSISG  300
SDGAPSSPVA LEFVRGRMLV SGYLIRPCEG GSTIDLLDHL DLEASSVPEV VRPLYESSEL  360
MAKQMIVSAL HFIEHVGNET NGKQIHSCHE DPAFLRSVSR RLCRGFNDAV NCFSEDGWTL  420
MNVNASDDII MSIKRTASFG VGANYDSIIC VKASLLLQNV IPASLVRLLK EHRSAWMDFN  480
FADHSVAFSK AACYAYPGPT IHNLSGTPVM LGHTNHDDEE LEVIRFERSA NQQHVSSGDL  540
YHLQVITGMD DTGFGACSEL IFAPIDRTIP NDAALLCSGF RIFLLGSNTG EDTGSSNIAP  600
NEALNARNAQ AAISHPLSML IVAFQFPSEA DLQEDVASMA RQYVKSVISS VKNISLRTMS  660
SGSNPVMHSH EANPAMGLKI PESTYFVNLA DLICQSYRSS LGVDMVGFNC ESTDSMLEQI  720
HHHHYAILCF SFMSLQACLY ANQAALNMLE TTLDNLHMLT VERILDGSNN LSLFSVFPTI  780
MQQGYAILPP GNCLSVTNRC VSYAQAVVWK VLAPDGSVHC LALALIDWSF V
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084330.10.0PREDICTED: homeobox-leucine zipper protein REVOLUTA-like isoform X1
TrEMBLB9SVC70.0B9SVC7_RICCO; DNA binding protein, putative
STRINGGLYMA11G20520.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1565734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein