PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011083676.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB_related
Protein Properties Length: 95aa    MW: 11051.4 Da    PI: 8.8748
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011083676.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.36.3e-12652347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                      WT+   +++ da +++ ++   +W   ar +g g+t +++ks++qk+
   XP_011083676.1  6 TWTAKQNKRFEDALAMYDKDtpdRWQNLARAVG-GKTVEEVKSHYQKL 52
                     7********************************.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.717257IPR017884SANT domain
SMARTSM007171.0E-7355IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-4659IPR009057Homeodomain-like
CDDcd001673.54E-6653No hitNo description
PfamPF002492.8E-8652IPR001005SANT/Myb domain
SuperFamilySSF466898.22E-13760IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MGSNSTWTAK QNKRFEDALA MYDKDTPDRW QNLARAVGGK TVEEVKSHYQ KLVEDIDHIE  60
SGKVPLPDYR PYGEAAKEKK IMDDQEQRLR SLKLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-34295693RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011083676.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083676.17e-66protein RADIALIS-like 4
SwissprotQ58FS36e-34RAD_ANTMA; Transcription factor RADIALIS
TrEMBLA0A2G9HCK43e-44A0A2G9HCK4_9LAMI; Uncharacterized protein
STRINGMigut.C00740.1.p2e-41(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.11e-35RAD-like 1
Publications ? help Back to Top
  1. Corley SB,Carpenter R,Copsey L,Coen E
    Floral asymmetry involves an interplay between TCP and MYB transcription factors in Antirrhinum.
    Proc. Natl. Acad. Sci. U.S.A., 2005. 102(14): p. 5068-73
    [PMID:15790677]
  2. Costa MM,Fox S,Hanna AI,Baxter C,Coen E
    Evolution of regulatory interactions controlling floral asymmetry.
    Development, 2005. 132(22): p. 5093-101
    [PMID:16236768]
  3. Stevenson CE, et al.
    Crystallization and preliminary X-ray analysis of the RAD protein from Antirrhinum majus.
    Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun., 2005. 61(Pt 10): p. 885-8
    [PMID:16511186]
  4. Stevenson CE, et al.
    Crystal structure of the MYB domain of the RAD transcription factor from Antirrhinum majus.
    Proteins, 2006. 65(4): p. 1041-5
    [PMID:17044043]