PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011083311.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family LBD
Protein Properties Length: 195aa    MW: 22062.7 Da    PI: 6.7654
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011083311.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260106.81.7e-33894186
          DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86
                    +C +Ck+lrrkC+k+Cv+apyf  e+ +++fa++h++FGasnv kll++lp ++r +a+ ++ y+A+ar++dP+yG+++ i++lqqq
  XP_011083311.1  8 PCGVCKFLRRKCVKGCVFAPYFSYEEaAAHFAAIHRVFGASNVAKLLAHLPMSDRCQAAVTVSYQAQARLQDPIYGCISRIFALQQQ 94
                    7*********************998868*********************************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.9677114IPR004883Lateral organ boundaries, LOB
PfamPF031957.5E-32894IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MRGCGNSPCG VCKFLRRKCV KGCVFAPYFS YEEAAAHFAA IHRVFGASNV AKLLAHLPMS  60
DRCQAAVTVS YQAQARLQDP IYGCISRIFA LQQQDTVRNW CQNHVEMSQW DTCLNNNNIG  120
SMPIHSDSRI ITPNPNSVKC GNTEENTLFG STDSPHEMQL NYTHWPFDQE EDGDHDHDLQ  180
SLPFRYIQYS QGKIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-29594896LOB family transfactor Ramosa2.1
5ly0_B2e-29594896LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19. {ECO:0000269|PubMed:17259263}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011083311.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020549902.11e-139LOB domain-containing protein 29-like
SwissprotQ9M2J77e-50LBD29_ARATH; LOB domain-containing protein 29
TrEMBLA0A2G9H1E52e-56A0A2G9H1E5_9LAMI; Uncharacterized protein
STRINGXP_009771981.18e-56(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.13e-52lateral organ boundaries-domain 29
Publications ? help Back to Top
  1. Gupta A,Singh M,Laxmi A
    Interaction between glucose and brassinosteroid during the regulation of lateral root development in Arabidopsis.
    Plant Physiol., 2015. 168(1): p. 307-20
    [PMID:25810094]
  2. Porco S, et al.
    Lateral root emergence in Arabidopsis is dependent on transcription factor LBD29 regulation of auxin influx carrier LAX3.
    Development, 2016. 143(18): p. 3340-9
    [PMID:27578783]
  3. Lee K,Seo PJ
    High-temperature promotion of callus formation requires the BIN2-ARF-LBD axis in Arabidopsis.
    Planta, 2017. 246(4): p. 797-802
    [PMID:28766014]
  4. Xu C,Cao H,Xu E,Zhang S,Hu Y
    Genome-Wide Identification of Arabidopsis LBD29 Target Genes Reveals the Molecular Events behind Auxin-Induced Cell Reprogramming during Callus Formation.
    Plant Cell Physiol., 2018. 59(4): p. 744-755
    [PMID:29121271]
  5. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]